Information for 2-CCCAGCCAGAGCAGAG (Motif 5)

A G T C A G T C A G T C C G T A A C T G A G T C A G T C C G T A A T C G C G T A A C T G A G T C C G T A A C T G C T G A A C T G
Reverse Opposite:
A G T C A G C T A G T C A C G T C T A G A G T C A C G T A T G C A C G T A C T G A C T G A G T C C G A T A C T G A C T G A C T G
p-value:1e-9
log p-value:-2.175e+01
Information Content per bp:1.949
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.0 +/- 7.4bp
Average Position of motif in Background43.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGCCAGAGCAGAG
TGCCCAGNHW--------
 A C G T A C G T A G T C A G T C A G T C C G T A A C T G A G T C A G T C C G T A A T C G C G T A A C T G A G T C C G T A A C T G C T G A A C T G
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CCCAGCCAGAGCAGAG--
------CACAGCAGGGGG
 A G T C A G T C A G T C C G T A A C T G A G T C A G T C C G T A A T C G C G T A A C T G A G T C C G T A A C T G C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCCAGCCAGAGCAGAG
--GAGSCCGAGC----
 A G T C A G T C A G T C C G T A A C T G A G T C A G T C C G T A A T C G C G T A A C T G A G T C C G T A A C T G C T G A A C T G
A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:4
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CCCAGCCAGAGCAGAG
ANNTNCCCACCCANNAC----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C T G A G T C A G T C C G T A A T C G C G T A A C T G A G T C C G T A A C T G C T G A A C T G
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCAGAGCAGAG
-CCAGACAG-------
 A G T C A G T C A G T C C G T A A C T G A G T C A G T C C G T A A T C G C G T A A C T G A G T C C G T A A C T G C T G A A C T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CCCAGCCAGAGCAGAG
--ATGCCAGACN----
 A G T C A G T C A G T C C G T A A C T G A G T C A G T C C G T A A T C G C G T A A C T G A G T C C G T A A C T G C T G A A C T G
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCAGAGCAGAG
-BCAGACWA-------
 A G T C A G T C A G T C C G T A A C T G A G T C A G T C C G T A A T C G C G T A A C T G A G T C C G T A A C T G C T G A A C T G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CCCAGCCAGAGCAGAG
CAAATCCAGACATCACA---
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C T G A G T C A G T C C G T A A T C G C G T A A C T G A G T C C G T A A C T G C T G A A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCCAGAGCAGAG
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C T G A G T C A G T C C G T A A T C G C G T A A C T G A G T C C G T A A C T G C T G A A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----CCCAGCCAGAGCAGAG
TACGCCCCGCCACTCTG---
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C T G A G T C A G T C C G T A A T C G C G T A A C T G A G T C C G T A A C T G C T G A A C T G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T A C G T A C G T