Information for 15-CGACAAGGCC (Motif 28)

A G T C T C A G C G T A A T G C C G T A C G T A A C T G A C T G A G T C A T G C
Reverse Opposite:
A T C G A C T G A G T C G T A C A C G T A C G T A T C G A C G T A G T C A C T G
p-value:1e-6
log p-value:-1.465e+01
Information Content per bp:1.875
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif34.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets52.2 +/- 22.7bp
Average Position of motif in Background45.0 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CGACAAGGCC
--ACAAAG--
 A G T C T C A G C G T A A T G C C G T A C G T A A C T G A C T G A G T C A T G C
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CGACAAGGCC
VRRACAAWGG-
 A C G T A G T C T C A G C G T A A T G C C G T A C G T A A C T G A C T G A G T C A T G C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CGACAAGGCC----
--ACAAAGGNBCCT
 A G T C T C A G C G T A A T G C C G T A C G T A A C T G A C T G A G T C A T G C A C G T A C G T A C G T A C G T
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CGACAAGGCC
-GACAATGNN
 A G T C T C A G C G T A A T G C C G T A C G T A A C T G A C T G A G T C A T G C
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CGACAAGGCC
RNAACAATGG-
 A C G T A G T C T C A G C G T A A T G C C G T A C G T A A C T G A C T G A G T C A T G C
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CGACAAGGCC---
---CAAGGHCANV
 A G T C T C A G C G T A A T G C C G T A C G T A A C T G A C T G A G T C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CGACAAGGCC
-RACAAWGG-
 A G T C T C A G C G T A A T G C C G T A C G T A A C T G A C T G A G T C A T G C
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGACAAGGCC
AAAACAATGG-
 A C G T A G T C T C A G C G T A A T G C C G T A C G T A A C T G A C T G A G T C A T G C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGACAAGGCC-
-NTCAAGGTCA
 A G T C T C A G C G T A A T G C C G T A C G T A A C T G A C T G A G T C A T G C A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGACAAGGCC
-AACAAAGG-
 A G T C T C A G C G T A A T G C C G T A C G T A A C T G A C T G A G T C A T G C
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T