Information for 9-AGCTCAATTCACA (Motif 22)

C G T A A C T G A T G C A C G T A G T C G T C A C G T A A C G T A C G T A T G C C G T A A T G C C G T A
Reverse Opposite:
A C G T A T C G A C G T A T C G C G T A C G T A A C G T A C G T A C T G C G T A A T C G G T A C A C G T
p-value:1e-8
log p-value:-1.903e+01
Information Content per bp:1.925
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets76.2 +/- 9.9bp
Average Position of motif in Background65.2 +/- 7.2bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXH1/MA0479.1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AGCTCAATTCACA
--TCCAATCCACA
 C G T A A C T G A T G C A C G T A G T C G T C A C G T A A C G T A C G T A T G C C G T A A T G C C G T A
A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AGCTCAATTCACA--
---SSAATCCACANN
 C G T A A C T G A T G C A C G T A G T C G T C A C G T A A C G T A C G T A T G C C G T A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PB0171.1_Sox18_2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGCTCAATTCACA--
GGACTGAATTCATGCC
 A C G T C G T A A C T G A T G C A C G T A G T C G T C A C G T A A C G T A C G T A T G C C G T A A T G C C G T A A C G T A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

PB0068.1_Sox1_1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGCTCAATTCACA----
-AATCAATTCAATAATT
 C G T A A C T G A T G C A C G T A G T C G T C A C G T A A C G T A C G T A T G C C G T A A T G C C G T A A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCTCAATTCACA
GKVTCADRTTWC-
 C G T A A C T G A T G C A C G T A G T C G T C A C G T A A C G T A C G T A T G C C G T A A T G C C G T A
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AGCTCAATTCACA-
-----NATTCAAAT
 C G T A A C T G A T G C A C G T A G T C G T C A C G T A A C G T A C G T A T G C C G T A A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGCTCAATTCACA
HNRAATCAAT-----
 A C G T A C G T C G T A A C T G A T G C A C G T A G T C G T C A C G T A A C G T A C G T A T G C C G T A A T G C C G T A
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGCTCAATTCACA-
ATAAACAATTAAACA
 A C G T C G T A A C T G A T G C A C G T A G T C G T C A C G T A A C G T A C G T A T G C C G T A A T G C C G T A A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AGCTCAATTCACA----
-------TTMACACCTT
 C G T A A C T G A T G C A C G T A G T C G T C A C G T A A C G T A C G T A T G C C G T A A T G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AGCTCAATTCACA---
------ATTAACACCT
 C G T A A C T G A T G C A C G T A G T C G T C A C G T A A C G T A C G T A T G C C G T A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T