Information for 4-GTCAAGCCTT (Motif 11)

C T A G C A G T T A G C G C T A T C G A A C T G A G T C A T G C G A C T A G C T
Reverse Opposite:
T C G A C T G A T A C G T C A G T G A C A G C T C G A T A T C G G T C A G A T C
p-value:1e-10
log p-value:-2.432e+01
Information Content per bp:1.513
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.24%
Number of Background Sequences with motif328.4
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets52.6 +/- 26.3bp
Average Position of motif in Background51.2 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GTCAAGCCTT--
NNGGCCACGCCTTTN
 A C G T A C G T A C G T C T A G C A G T T A G C G C T A T C G A A C T G A G T C A T G C G A C T A G C T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTCAAGCCTT
AGTCACGC---
 A C G T C T A G C A G T T A G C G C T A T C G A A C T G A G T C A T G C G A C T A G C T
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTCAAGCCTT
-CNAGGCCT-
 C T A G C A G T T A G C G C T A T C G A A C T G A G T C A T G C G A C T A G C T
A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GTCAAGCCTT
--CAAGCTT-
 C T A G C A G T T A G C G C T A T C G A A C T G A G T C A T G C G A C T A G C T
A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTCAAGCCTT
ATCACCCCAT
 C T A G C A G T T A G C G C T A T C G A A C T G A G T C A T G C G A C T A G C T
T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GTCAAGCCTT
CGTCTAGACA-
 A C G T C T A G C A G T T A G C G C T A T C G A A C T G A G T C A T G C G A C T A G C T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTCAAGCCTT
ATCACCCCAT
 C T A G C A G T T A G C G C T A T C G A A C T G A G T C A T G C G A C T A G C T
C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTCAAGCCTT
CNGTCACGCCAC
 A C G T A C G T C T A G C A G T T A G C G C T A T C G A A C T G A G T C A T G C G A C T A G C T
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

TBX15/MA0803.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTCAAGCCTT
-TCACACCT-
 C T A G C A G T T A G C G C T A T C G A A C T G A G T C A T G C G A C T A G C T
A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GTCAAGCCTT
NTGTCAN-----
 A C G T A C G T C T A G C A G T T A G C G C T A T C G A A C T G A G T C A T G C G A C T A G C T
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T