Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 901)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47177)	% of Background Sequences with Motif
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-25	-5.795e+01	0.0000	170.0	18.87%	3736.4	7.92%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-23	-5.348e+01	0.0000	171.0	18.98%	3932.4	8.34%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-23	-5.315e+01	0.0000	128.0	14.21%	2487.8	5.27%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-22	-5.254e+01	0.0000	129.0	14.32%	2537.1	5.38%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-22	-5.228e+01	0.0000	135.0	14.98%	2740.9	5.81%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-20	-4.673e+01	0.0000	46.0	5.11%	410.5	0.87%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-20	-4.624e+01	0.0000	114.0	12.65%	2243.5	4.76%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-19	-4.483e+01	0.0000	163.0	18.09%	3984.2	8.45%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-19	-4.412e+01	0.0000	130.0	14.43%	2841.9	6.03%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-16	-3.904e+01	0.0000	78.0	8.66%	1334.8	2.83%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-16	-3.703e+01	0.0000	50.0	5.55%	624.8	1.32%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-15	-3.646e+01	0.0000	105.0	11.65%	2261.3	4.79%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-14	-3.453e+01	0.0000	51.0	5.66%	691.4	1.47%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-14	-3.444e+01	0.0000	35.0	3.88%	328.6	0.70%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-14	-3.332e+01	0.0000	82.0	9.10%	1611.7	3.42%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-13	-3.144e+01	0.0000	120.0	13.32%	2983.0	6.32%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-13	-3.135e+01	0.0000	110.0	12.21%	2626.4	5.57%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-13	-3.095e+01	0.0000	75.0	8.32%	1461.6	3.10%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-12	-2.789e+01	0.0000	57.0	6.33%	997.3	2.11%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-12	-2.765e+01	0.0000	27.0	3.00%	245.9	0.52%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-10	-2.483e+01	0.0000	38.0	4.22%	538.7	1.14%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-10	-2.455e+01	0.0000	67.0	7.44%	1406.3	2.98%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-9	-2.101e+01	0.0000	83.0	9.21%	2101.2	4.46%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-9	-2.083e+01	0.0000	23.0	2.55%	245.0	0.52%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-9	-2.075e+01	0.0000	23.0	2.55%	245.7	0.52%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-7	-1.767e+01	0.0000	47.0	5.22%	984.6	2.09%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-7	-1.752e+01	0.0000	48.0	5.33%	1023.0	2.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-7	-1.735e+01	0.0000	60.0	6.66%	1437.7	3.05%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-7	-1.709e+01	0.0000	20.0	2.22%	229.5	0.49%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-7	-1.618e+01	0.0000	59.0	6.55%	1452.2	3.08%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-6	-1.535e+01	0.0000	19.0	2.11%	232.6	0.49%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-5	-1.324e+01	0.0000	12.0	1.33%	109.0	0.23%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-5	-1.300e+01	0.0000	145.0	16.09%	5182.3	10.99%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-5	-1.293e+01	0.0000	47.0	5.22%	1167.2	2.47%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-5	-1.290e+01	0.0000	71.0	7.88%	2073.2	4.40%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-5	-1.266e+01	0.0000	182.0	20.20%	6885.0	14.60%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-5	-1.196e+01	0.0001	39.0	4.33%	926.5	1.96%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-4	-1.119e+01	0.0001	26.0	2.89%	520.0	1.10%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-4	-9.349e+00	0.0008	30.0	3.33%	720.2	1.53%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-8.394e+00	0.0021	35.0	3.88%	946.4	2.01%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-3	-8.202e+00	0.0024	200.0	22.20%	8315.0	17.63%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-3	-8.112e+00	0.0026	147.0	16.32%	5827.7	12.36%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-3	-7.749e+00	0.0037	63.0	6.99%	2113.8	4.48%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-7.716e+00	0.0037	32.0	3.55%	869.0	1.84%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-7.379e+00	0.0050	23.0	2.55%	558.0	1.18%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-3	-7.069e+00	0.0067	13.0	1.44%	238.6	0.51%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-3	-7.031e+00	0.0068	23.0	2.55%	572.6	1.21%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-3	-7.007e+00	0.0069	24.0	2.66%	609.7	1.29%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-2	-6.853e+00	0.0078	46.0	5.11%	1476.9	3.13%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-6.349e+00	0.0127	29.0	3.22%	830.1	1.76%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-2	-6.319e+00	0.0129	24.0	2.66%	642.6	1.36%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-2	-6.122e+00	0.0154	119.0	13.21%	4802.2	10.18%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-6.104e+00	0.0154	34.0	3.77%	1042.8	2.21%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-6.012e+00	0.0165	10.0	1.11%	176.7	0.37%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-2	-5.896e+00	0.0182	29.0	3.22%	857.1	1.82%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-5.818e+00	0.0193	7.0	0.78%	97.5	0.21%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2	-5.761e+00	0.0201	81.0	8.99%	3103.3	6.58%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-2	-5.751e+00	0.0201	17.0	1.89%	414.6	0.88%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-2	-5.701e+00	0.0206	10.0	1.11%	184.2	0.39%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-5.608e+00	0.0222	131.0	14.54%	5445.4	11.55%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-5.378e+00	0.0275	15.0	1.66%	359.5	0.76%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-5.126e+00	0.0349	9.0	1.00%	169.0	0.36%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-5.023e+00	0.0380	36.0	4.00%	1204.2	2.55%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-2	-5.015e+00	0.0380	43.0	4.77%	1502.7	3.19%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-4.850e+00	0.0438	17.0	1.89%	455.9	0.97%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-2	-4.751e+00	0.0477	74.0	8.21%	2913.4	6.18%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-4.729e+00	0.0480	11.0	1.22%	246.8	0.52%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-2	-4.721e+00	0.0480	35.0	3.88%	1187.1	2.52%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-4.702e+00	0.0480	21.0	2.33%	617.0	1.31%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-4.673e+00	0.0486	11.0	1.22%	248.1	0.53%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-4.643e+00	0.0494	48.0	5.33%	1756.8	3.72%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-4.637e+00	0.0494	24.0	2.66%	739.3	1.57%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-4.628e+00	0.0494	10.0	1.11%	216.9	0.46%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-4.569e+00	0.0510	10.0	1.11%	218.8	0.46%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-4.552e+00	0.0512	2.0	0.22%	8.8	0.02%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-4.441e+00	0.0564	27.0	3.00%	875.9	1.86%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-4.414e+00	0.0573	88.0	9.77%	3610.0	7.65%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-4.325e+00	0.0618	9.0	1.00%	193.2	0.41%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-4.259e+00	0.0652	10.0	1.11%	229.8	0.49%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-4.049e+00	0.0793	31.0	3.44%	1075.9	2.28%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.949e+00	0.0866	35.0	3.88%	1257.2	2.67%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-3.938e+00	0.0866	7.0	0.78%	140.1	0.30%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.851e+00	0.0932	60.0	6.66%	2392.9	5.07%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.826e+00	0.0945	70.0	7.77%	2859.6	6.06%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.674e+00	0.1086	32.0	3.55%	1153.6	2.45%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.518e+00	0.1255	67.0	7.44%	2767.0	5.87%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-3.486e+00	0.1281	16.0	1.78%	493.4	1.05%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.475e+00	0.1281	8.0	0.89%	189.4	0.40%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.382e+00	0.1389	2.0	0.22%	15.9	0.03%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-3.349e+00	0.1421	24.0	2.66%	837.9	1.78%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.347e+00	0.1421	7.0	0.78%	159.8	0.34%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.284e+00	0.1483	10.0	1.11%	270.4	0.57%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-3.248e+00	0.1520	95.0	10.54%	4147.6	8.79%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-1	-3.142e+00	0.1673	5.0	0.55%	99.8	0.21%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-3.119e+00	0.1693	14.0	1.55%	436.7	0.93%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-3.103e+00	0.1702	7.0	0.78%	168.6	0.36%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-3.102e+00	0.1702	3.0	0.33%	41.9	0.09%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-3.097e+00	0.1702	145.0	16.09%	6628.8	14.05%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.063e+00	0.1718	87.0	9.66%	3798.8	8.05%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-3.055e+00	0.1718	33.0	3.66%	1263.7	2.68%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-2.899e+00	0.1985	29.0	3.22%	1101.2	2.33%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.879e+00	0.2005	92.0	10.21%	4078.5	8.65%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-2.870e+00	0.2005	12.0	1.33%	371.0	0.79%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.867e+00	0.2005	23.0	2.55%	838.5	1.78%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.840e+00	0.2026	34.0	3.77%	1334.9	2.83%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.832e+00	0.2026	32.0	3.55%	1244.3	2.64%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.822e+00	0.2026	10.0	1.11%	294.2	0.62%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.820e+00	0.2026	4.0	0.44%	76.0	0.16%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-2.769e+00	0.2096	11.0	1.22%	337.6	0.72%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-2.752e+00	0.2111	11.0	1.22%	338.9	0.72%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.734e+00	0.2129	22.0	2.44%	807.3	1.71%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.724e+00	0.2132	22.0	2.44%	808.3	1.71%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-2.715e+00	0.2133	72.0	7.99%	3144.8	6.67%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-1	-2.679e+00	0.2192	114.0	12.65%	5202.1	11.03%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.677e+00	0.2192	23.0	2.55%	857.6	1.82%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-2.651e+00	0.2214	30.0	3.33%	1176.0	2.49%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.641e+00	0.2218	11.0	1.22%	345.5	0.73%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.633e+00	0.2218	8.0	0.89%	226.4	0.48%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-2.631e+00	0.2218	114.0	12.65%	5214.7	11.06%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-2.609e+00	0.2232	1.0	0.11%	4.8	0.01%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-2.593e+00	0.2250	13.0	1.44%	431.2	0.91%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-2.589e+00	0.2250	29.0	3.22%	1137.7	2.41%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-2.552e+00	0.2305	13.0	1.44%	434.1	0.92%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.552e+00	0.2305	75.0	8.32%	3322.7	7.05%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.551e+00	0.2305	117.0	12.99%	5383.1	11.41%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.460e+00	0.2469	11.0	1.22%	357.9	0.76%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.431e+00	0.2520	27.0	3.00%	1065.2	2.26%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-2.422e+00	0.2525	28.0	3.11%	1112.5	2.36%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.402e+00	0.2555	11.0	1.22%	361.0	0.77%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.375e+00	0.2606	19.0	2.11%	710.1	1.51%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.294e+00	0.2803	225.0	24.97%	10903.3	23.12%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.287e+00	0.2803	21.0	2.33%	809.7	1.72%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.258e+00	0.2861	20.0	2.22%	767.9	1.63%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.254e+00	0.2861	3.0	0.33%	59.1	0.13%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.253e+00	0.2861	8.0	0.89%	247.2	0.52%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.240e+00	0.2861	20.0	2.22%	769.5	1.63%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.216e+00	0.2897	50.0	5.55%	2181.1	4.62%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.196e+00	0.2935	144.0	15.98%	6834.9	14.49%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.141e+00	0.3078	7.0	0.78%	213.2	0.45%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.126e+00	0.3102	2.0	0.22%	31.3	0.07%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.115e+00	0.3113	61.0	6.77%	2734.7	5.80%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.084e+00	0.3188	13.0	1.44%	472.1	1.00%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.066e+00	0.3225	35.0	3.88%	1490.3	3.16%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.025e+00	0.3313	2.0	0.22%	33.6	0.07%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.025e+00	0.3313	2.0	0.22%	34.0	0.07%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.023e+00	0.3313	14.0	1.55%	522.5	1.11%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.017e+00	0.3313	5.0	0.55%	141.0	0.30%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.989e+00	0.3364	7.0	0.78%	222.1	0.47%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.986e+00	0.3364	67.0	7.44%	3057.6	6.48%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.932e+00	0.3516	15.0	1.66%	576.1	1.22%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.878e+00	0.3687	47.0	5.22%	2102.5	4.46%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.837e+00	0.3816	5.0	0.55%	149.8	0.32%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.758e+00	0.4101	12.0	1.33%	458.2	0.97%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.736e+00	0.4167	17.0	1.89%	690.7	1.46%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.717e+00	0.4217	78.0	8.66%	3672.6	7.79%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.713e+00	0.4217	56.0	6.22%	2580.2	5.47%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.708e+00	0.4217	5.0	0.55%	156.0	0.33%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.683e+00	0.4279	10.0	1.11%	375.7	0.80%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.675e+00	0.4288	44.0	4.88%	1998.5	4.24%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.658e+00	0.4335	38.0	4.22%	1708.6	3.62%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.654e+00	0.4335	4.0	0.44%	118.3	0.25%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.641e+00	0.4354	9.0	1.00%	334.1	0.71%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.617e+00	0.4435	58.0	6.44%	2703.7	5.73%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.579e+00	0.4575	15.0	1.66%	616.0	1.31%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.557e+00	0.4648	4.0	0.44%	123.8	0.26%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.513e+00	0.4830	30.0	3.33%	1346.9	2.86%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.510e+00	0.4830	18.0	2.00%	767.7	1.63%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.508e+00	0.4830	11.0	1.22%	439.0	0.93%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.502e+00	0.4830	27.0	3.00%	1202.2	2.55%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.478e+00	0.4882	39.0	4.33%	1795.4	3.81%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.450e+00	0.4995	137.0	15.21%	6750.6	14.31%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.440e+00	0.5014	35.0	3.88%	1606.3	3.41%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.440e+00	0.5014	84.0	9.32%	4059.7	8.61%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.436e+00	0.5014	14.0	1.55%	587.8	1.25%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.424e+00	0.5014	2.0	0.22%	49.9	0.11%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.424e+00	0.5014	2.0	0.22%	49.7	0.11%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.421e+00	0.5014	74.0	8.21%	3560.6	7.55%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.421e+00	0.5014	5.0	0.55%	174.3	0.37%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.386e+00	0.5087	69.0	7.66%	3319.3	7.04%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.379e+00	0.5091	41.0	4.55%	1917.1	4.06%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.367e+00	0.5124	2.0	0.22%	51.7	0.11%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.348e+00	0.5194	33.0	3.66%	1527.1	3.24%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.348e+00	0.5194	39.0	4.33%	1825.4	3.87%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.338e+00	0.5194	63.0	6.99%	3031.5	6.43%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.325e+00	0.5232	15.0	1.66%	650.6	1.38%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.310e+00	0.5282	59.0	6.55%	2838.6	6.02%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.293e+00	0.5344	94.0	10.43%	4619.3	9.79%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.277e+00	0.5398	6.0	0.67%	230.4	0.49%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.267e+00	0.5427	35.0	3.88%	1645.9	3.49%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.263e+00	0.5427	19.0	2.11%	854.6	1.81%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.253e+00	0.5446	10.0	1.11%	420.4	0.89%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.244e+00	0.5463	5.0	0.55%	187.3	0.40%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.227e+00	0.5528	7.0	0.78%	281.9	0.60%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.221e+00	0.5531	73.0	8.10%	3576.1	7.58%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.218e+00	0.5531	23.0	2.55%	1059.2	2.25%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.187e+00	0.5670	29.0	3.22%	1364.7	2.89%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.178e+00	0.5690	28.0	3.11%	1316.9	2.79%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.121e+00	0.5994	32.0	3.55%	1530.8	3.25%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.099e+00	0.6096	53.0	5.88%	2600.8	5.51%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.089e+00	0.6124	57.0	6.33%	2807.7	5.95%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.077e+00	0.6165	3.0	0.33%	108.9	0.23%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.068e+00	0.6191	16.0	1.78%	740.8	1.57%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.067e+00	0.6191	26.0	2.89%	1241.1	2.63%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.066e+00	0.6191	18.0	2.00%	841.0	1.78%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.066e+00	0.6191	18.0	2.00%	840.3	1.78%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.032e+00	0.6299	45.0	4.99%	2214.1	4.69%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.029e+00	0.6299	76.0	8.44%	3802.2	8.06%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.024e+00	0.6299	126.0	13.98%	6381.9	13.53%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.014e+00	0.6316	9.0	1.00%	402.3	0.85%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.008e+00	0.6323	6.0	0.67%	256.6	0.54%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-9.925e-01	0.6394	9.0	1.00%	405.6	0.86%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-9.701e-01	0.6508	15.0	1.66%	708.7	1.50%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-9.390e-01	0.6683	20.0	2.22%	967.4	2.05%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-9.067e-01	0.6869	11.0	1.22%	518.6	1.10%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-8.910e-01	0.6946	18.0	2.00%	876.1	1.86%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-8.813e-01	0.6981	50.0	5.55%	2522.0	5.35%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-8.770e-01	0.6981	60.0	6.66%	3040.7	6.45%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-8.741e-01	0.6981	3.0	0.33%	123.0	0.26%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-8.621e-01	0.7019	3.0	0.33%	124.6	0.26%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.546e-01	0.7039	1.0	0.11%	29.7	0.06%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-8.485e-01	0.7050	14.0	1.55%	681.0	1.44%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.318e-01	0.7137	6.0	0.67%	277.5	0.59%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.274e-01	0.7137	8.0	0.89%	379.2	0.80%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-8.222e-01	0.7141	16.0	1.78%	789.8	1.67%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.048e-01	0.7235	3.0	0.33%	129.6	0.27%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-7.789e-01	0.7391	61.0	6.77%	3134.1	6.65%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.759e-01	0.7391	10.0	1.11%	490.9	1.04%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.598e-01	0.7468	1.0	0.11%	33.8	0.07%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-7.592e-01	0.7468	45.0	4.99%	2310.6	4.90%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-7.173e-01	0.7724	7.0	0.78%	346.0	0.73%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.850e-01	0.7943	140.0	15.54%	7314.1	15.51%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.838e-01	0.7943	8.0	0.89%	403.2	0.85%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.276e-01	0.8340	68.0	7.55%	3576.0	7.58%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-6.148e-01	0.8412	15.0	1.66%	788.4	1.67%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-6.089e-01	0.8426	5.0	0.55%	257.9	0.55%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.046e-01	0.8426	20.0	2.22%	1056.4	2.24%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-5.985e-01	0.8441	53.0	5.88%	2802.6	5.94%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-5.900e-01	0.8478	55.0	6.10%	2913.0	6.18%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-5.899e-01	0.8478	23.0	2.55%	1220.2	2.59%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-5.857e-01	0.8478	19.0	2.11%	1009.8	2.14%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.726e-01	0.8519	2.0	0.22%	99.4	0.21%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.649e-01	0.8550	29.0	3.22%	1548.7	3.28%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.596e-01	0.8560	28.0	3.11%	1497.0	3.17%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-5.591e-01	0.8560	127.0	14.10%	6727.5	14.26%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.535e-01	0.8560	14.0	1.55%	752.0	1.59%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-5.503e-01	0.8560	158.0	17.54%	8366.2	17.74%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.424e-01	0.8567	47.0	5.22%	2514.4	5.33%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.334e-01	0.8610	68.0	7.55%	3632.4	7.70%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.269e-01	0.8631	21.0	2.33%	1136.8	2.41%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-5.266e-01	0.8631	5.0	0.55%	271.0	0.57%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-5.254e-01	0.8631	4.0	0.44%	216.8	0.46%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-5.235e-01	0.8631	26.0	2.89%	1405.2	2.98%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.155e-01	0.8631	18.0	2.00%	979.6	2.08%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-5.053e-01	0.8646	37.0	4.11%	2001.6	4.24%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-4.899e-01	0.8746	4.0	0.44%	222.6	0.47%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.846e-01	0.8758	31.0	3.44%	1690.1	3.58%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.801e-01	0.8763	11.0	1.22%	611.8	1.30%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.650e-01	0.8862	21.0	2.33%	1160.5	2.46%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-4.622e-01	0.8862	1.0	0.11%	53.0	0.11%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.559e-01	0.8874	13.0	1.44%	728.8	1.55%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-4.408e-01	0.8974	5.0	0.55%	288.8	0.61%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-4.380e-01	0.8974	81.0	8.99%	4390.8	9.31%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.371e-01	0.8974	3.0	0.33%	174.7	0.37%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.294e-01	0.8975	15.0	1.66%	847.8	1.80%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-4.232e-01	0.8997	10.0	1.11%	573.2	1.22%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.227e-01	0.8997	5.0	0.55%	292.9	0.62%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-4.200e-01	0.8997	10.0	1.11%	574.5	1.22%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.173e-01	0.8997	2.0	0.22%	118.7	0.25%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.142e-01	0.8997	12.0	1.33%	687.6	1.46%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.100e-01	0.8997	1.0	0.11%	57.2	0.12%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-3.987e-01	0.9015	16.0	1.78%	914.7	1.94%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-3.921e-01	0.9042	10.0	1.11%	583.1	1.24%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.881e-01	0.9045	13.0	1.44%	752.5	1.60%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.868e-01	0.9045	102.0	11.32%	5554.8	11.78%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.825e-01	0.9045	80.0	8.88%	4383.0	9.29%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.808e-01	0.9045	15.0	1.66%	866.1	1.84%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.700e-01	0.9077	9.0	1.00%	534.3	1.13%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.611e-01	0.9093	4.0	0.44%	249.0	0.53%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.611e-01	0.9093	4.0	0.44%	248.2	0.53%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.587e-01	0.9093	145.0	16.09%	7873.1	16.69%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-3.542e-01	0.9093	6.0	0.67%	367.9	0.78%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.446e-01	0.9146	12.0	1.33%	713.9	1.51%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-3.431e-01	0.9146	24.0	2.66%	1382.1	2.93%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-3.382e-01	0.9146	9.0	1.00%	545.7	1.16%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.305e-01	0.9178	15.0	1.66%	888.8	1.88%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.193e-01	0.9248	29.0	3.22%	1672.7	3.55%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.138e-01	0.9267	56.0	6.22%	3151.1	6.68%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-3.132e-01	0.9267	4.0	0.44%	260.3	0.55%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.111e-01	0.9267	1.0	0.11%	69.4	0.15%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.073e-01	0.9267	61.0	6.77%	3428.0	7.27%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.073e-01	0.9267	18.0	2.00%	1068.2	2.26%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.963e-01	0.9270	2.0	0.22%	139.2	0.30%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.952e-01	0.9270	11.0	1.22%	677.7	1.44%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.861e-01	0.9301	14.0	1.55%	853.6	1.81%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.816e-01	0.9311	57.0	6.33%	3235.2	6.86%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-2.782e-01	0.9311	8.0	0.89%	510.4	1.08%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.706e-01	0.9350	34.0	3.77%	1983.3	4.21%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.624e-01	0.9395	13.0	1.44%	808.7	1.71%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.616e-01	0.9395	49.0	5.44%	2817.9	5.97%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.606e-01	0.9395	13.0	1.44%	809.4	1.72%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.555e-01	0.9395	7.0	0.78%	460.6	0.98%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-2.456e-01	0.9428	8.0	0.89%	524.6	1.11%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.397e-01	0.9453	11.0	1.22%	704.3	1.49%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.338e-01	0.9477	1.0	0.11%	82.2	0.17%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-2.284e-01	0.9498	3.0	0.33%	222.1	0.47%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.276e-01	0.9498	17.0	1.89%	1059.5	2.25%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.240e-01	0.9498	1.0	0.11%	84.6	0.18%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.240e-01	0.9498	1.0	0.11%	84.6	0.18%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.240e-01	0.9498	1.0	0.11%	84.6	0.18%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.180e-01	0.9498	2.0	0.22%	158.7	0.34%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.056e-01	0.9529	1.0	0.11%	88.3	0.19%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.039e-01	0.9529	26.0	2.89%	1591.2	3.37%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.020e-01	0.9529	3.0	0.33%	231.9	0.49%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.991e-01	0.9529	15.0	1.66%	963.7	2.04%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.983e-01	0.9529	4.0	0.44%	298.8	0.63%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.922e-01	0.9529	10.0	1.11%	672.0	1.42%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.836e-01	0.9557	9.0	1.00%	617.1	1.31%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.823e-01	0.9557	69.0	7.66%	4010.9	8.50%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.610e-01	0.9714	4.0	0.44%	315.6	0.67%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.533e-01	0.9759	4.0	0.44%	319.6	0.68%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.383e-01	0.9875	1.0	0.11%	107.6	0.23%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.342e-01	0.9884	48.0	5.33%	2918.3	6.19%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.267e-01	0.9928	37.0	4.11%	2307.4	4.89%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.243e-01	0.9928	2.0	0.22%	193.5	0.41%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.171e-01	0.9962	51.0	5.66%	3117.3	6.61%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.140e-01	0.9963	14.0	1.55%	979.5	2.08%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-9.430e-02	1.0000	29.0	3.22%	1899.8	4.03%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-8.424e-02	1.0000	3.0	0.33%	294.9	0.63%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-7.666e-02	1.0000	19.0	2.11%	1336.5	2.83%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.766e-02	1.0000	18.0	2.00%	1292.8	2.74%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-6.568e-02	1.0000	7.0	0.78%	595.8	1.26%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-6.326e-02	1.0000	10.0	1.11%	798.0	1.69%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.314e-02	1.0000	2.0	0.22%	235.4	0.50%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.290e-02	1.0000	37.0	4.11%	2437.1	5.17%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.920e-02	1.0000	5.0	0.55%	466.3	0.99%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.393e-02	1.0000	1.0	0.11%	154.8	0.33%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-4.681e-02	1.0000	30.0	3.33%	2072.5	4.39%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.451e-02	1.0000	9.0	1.00%	767.5	1.63%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-4.197e-02	1.0000	8.0	0.89%	705.6	1.50%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.236e-02	1.0000	2.0	0.22%	276.7	0.59%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.118e-02	1.0000	1.0	0.11%	182.9	0.39%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.058e-02	1.0000	1.0	0.11%	183.1	0.39%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.841e-02	1.0000	4.0	0.44%	449.6	0.95%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.880e-02	1.0000	12.0	1.33%	1056.8	2.24%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.708e-02	1.0000	1.0	0.11%	213.0	0.45%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.325e-02	1.0000	68.0	7.55%	4533.9	9.61%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.684e-03	1.0000	1.0	0.11%	270.4	0.57%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.765e-03	1.0000	46.0	5.11%	3529.2	7.48%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	46.3	0.10%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	17.2	0.04%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	65.2	0.14%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	44.4	0.09%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	51.1	0.11%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	4.6	0.01%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	49.4	0.10%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	7.8	0.02%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	13.1	0.03%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	48.9	0.10%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	40.0	0.08%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	35.6	0.08%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	2.8	0.01%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	61.9	0.13%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	10.9	0.02%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	24.2	0.05%