Information for 3-NGMAGCCAWW (Motif 4)

A G C T T A C G G T A C T C G A A T C G G A T C G A T C G C T A G C A T G C A T
Reverse Opposite:
C G T A C G T A C G A T C T A G C T A G A T G C A G C T C A T G A T G C T C G A
p-value:1e-15
log p-value:-3.599e+01
Information Content per bp:1.467
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif8.99%
Number of Background Sequences with motif1503.6
Percentage of Background Sequences with motif3.19%
Average Position of motif in Targets49.9 +/- 26.9bp
Average Position of motif in Background50.6 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:NGMAGCCAWW
---TGCCAA-
 A G C T T A C G G T A C T C G A A T C G G A T C G A T C G C T A G C A T G C A T
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:NGMAGCCAWW-
GTCCGCCATTA
 A G C T T A C G G T A C T C G A A T C G G A T C G A T C G C T A G C A T G C A T A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----NGMAGCCAWW---
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A G C T T A C G G T A C T C G A A T C G G A T C G A T C G C T A G C A T G C A T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:NGMAGCCAWW
-CGTGCCAAG
 A G C T T A C G G T A C T C G A A T C G G A T C G A T C G C T A G C A T G C A T
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:NGMAGCCAWW---
-GCNGCCATCTTG
 A G C T T A C G G T A C T C G A A T C G G A T C G A T C G C T A G C A T G C A T A C G T A C G T A C G T
A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:NGMAGCCAWW---
-GCCGCCATCTTG
 A G C T T A C G G T A C T C G A A T C G G A T C G A T C G C T A G C A T G C A T A C G T A C G T A C G T
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:NGMAGCCAWW--
ACTAGCCAATCA
 A G C T T A C G G T A C T C G A A T C G G A T C G A T C G C T A G C A T G C A T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:NGMAGCCAWW
--CAGCC---
 A G C T T A C G G T A C T C G A A T C G G A T C G A T C G C T A G C A T G C A T
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:NGMAGCCAWW
-BCAGACWA-
 A G C T T A C G G T A C T C G A A T C G G A T C G A T C G C T A G C A T G C A T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.64
Offset:3
Orientation:forward strand
Alignment:NGMAGCCAWW---
---AGCCAATCGG
 A G C T T A C G G T A C T C G A A T C G G A T C G A T C G C T A G C A T G C A T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G