Information for 4-GAGCAGGCAAGCC (Motif 8)

A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A G C T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G G T A C C G A T C G A T A C T G A G T C A G T C A C G T A C T G G T A C A C G T A G T C
p-value:1e-10
log p-value:-2.444e+01
Information Content per bp:1.937
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.0 +/- 23.4bp
Average Position of motif in Background43.6 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GAGCAGGCAAGCC-
---AAGGCAAGTGT
 A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A G C T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GAGCAGGCAAGCC----
--SCAGYCADGCATGAC
 A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A G C T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5/MA0014.2/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGGCAAGCC----
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A G C T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGGCAAGCC
AGCAACAGCCGCACC
 A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A G C T A A C T G A G T C A G T C
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAGGCAAGCC
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A G C T A A C T G A G T C A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:6
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GAGCAGGCAAGCC
AAGGKGRCGCAGGCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A G C T A A C T G A G T C A G T C
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GAGCAGGCAAGCC
--BCAGACWA---
 A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A G C T A A C T G A G T C A G T C
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GAGCAGGCAAGCC
AAAGACCTGTCAATCC
 A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A G C T A A C T G A G T C A G T C
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GAGCAGGCAAGCC-----
--GCAGCCAAGCGTGACN
 A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A G C T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGCAGGCAAGCC
TBGCACGCAA---
 A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A G C T A A C T G A G T C A G T C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T