Information for 2-GCCGCTGCCACACACA (Motif 4)

A C T G A T G C G T A C T C A G A G T C A C G T A T C G A T G C A G T C G T C A A G T C G T C A A G T C G T C A A G T C G T C A
Reverse Opposite:
C A G T A C T G C A G T A C T G C A G T T A C G A C G T A C T G A T C G A T G C C G T A A C T G A G T C A C T G A T C G A G T C
p-value:1e-13
log p-value:-3.100e+01
Information Content per bp:1.809
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.8 +/- 26.8bp
Average Position of motif in Background16.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GCCGCTGCCACACACA
------GCCACACCCA
 A C T G A T G C G T A C T C A G A G T C A C G T A T C G A T G C A G T C G T C A A G T C G T C A A G T C G T C A A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCCGCTGCCACACACA
---SCTGTCAVTCAV-
 A C T G A T G C G T A C T C A G A G T C A C G T A T C G A T G C A G T C G T C A A G T C G T C A A G T C G T C A A G T C G T C A
A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCCGCTGCCACACACA
---NCTGTCAATCAN-
 A C T G A T G C G T A C T C A G A G T C A C G T A T C G A T G C A G T C G T C A A G T C G T C A A G T C G T C A A G T C G T C A
A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GCCGCTGCCACACACA-
-----GGCCACACCCAN
 A C T G A T G C G T A C T C A G A G T C A C G T A T C G A T G C A G T C G T C A A G T C G T C A A G T C G T C A A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G

Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCGCTGCCACACACA
-CCCCTCCCCCAC---
 A C T G A T G C G T A C T C A G A G T C A C G T A T C G A T G C A G T C G T C A A G T C G T C A A G T C G T C A A G T C G T C A
A C G T T A G C G T A C A G T C G T A C C G A T A G T C A G T C A G T C A G T C A G T C C G T A G A T C A C G T A C G T A C G T

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCCGCTGCCACACACA
GCCACRCCCACY----
 A C T G A T G C G T A C T C A G A G T C A C G T A T C G A T G C A G T C G T C A A G T C G T C A A G T C G T C A A G T C G T C A
T C A G T G A C G T A C T G C A G T A C C T A G G T A C A T G C A G T C G T C A A G T C G A C T A C G T A C G T A C G T A C G T

Klf1/MA0493.1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GCCGCTGCCACACACA
-----GGCCACACCCA
 A C T G A T G C G T A C T C A G A G T C A C G T A T C G A T G C A G T C G T C A A G T C G T C A A G T C G T C A A G T C G T C A
A C G T A C G T A C G T A C G T A C G T C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A

Klf4/MA0039.2/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GCCGCTGCCACACACA
------GCCCCACCCA
 A C T G A T G C G T A C T C A G A G T C A C G T A T C G A T G C A G T C G T C A A G T C G T C A A G T C G T C A A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T G A C G A T C T G A C G T A C C T G A T A G C A G T C A G T C G C T A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCCGCTGCCACACACA
--GSCTGTCACTCA--
 A C T G A T G C G T A C T C A G A G T C A C G T A T C G A T G C A G T C G T C A A G T C G T C A A G T C G T C A A G T C G T C A
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GCCGCTGCCACACACA-
-----GGCCACRCCCMK
 A C T G A T G C G T A C T C A G A G T C A C G T A T C G A T G C A G T C G T C A A G T C G T C A A G T C G T C A A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G