Information for 2-TGGCTTTATTTGTCTT (Motif 3)

A C G T A T C G A C T G A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G C T C T A G A C G T A G T C C G A T A C G T
Reverse Opposite:
C G T A C G T A A C T G C G T A A G T C C T G A C T G A C T G A A C G T C G T A C G T A C G T A C T A G G T A C A T G C G T C A
p-value:1e-12
log p-value:-2.956e+01
Information Content per bp:1.823
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.1 +/- 24.0bp
Average Position of motif in Background42.5 +/- 0.3bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0108.1_Atf1_2/Jaspar

Match Rank:1
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:TGGCTTTATTTGTCTT--
----NTTATTCGTCATNC
 A C G T A T C G A C T G A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G C T C T A G A C G T A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G C A T G C A T T C G A G A C T C A G T A G T C T A C G G A C T G A T C T C G A A G C T G A C T A T G C

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TGGCTTTATTTGTCTT
--TTTTTATTGG----
 A C G T A T C G A C T G A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G C T C T A G A C G T A G T C C G A T A C G T
A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TGGCTTTATTTGTCTT
--NTTTTATTGG----
 A C G T A T C G A C T G A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G C T C T A G A C G T A G T C C G A T A C G T
A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGGCTTTATTTGTCTT
---TTTTATKRGG---
 A C G T A T C G A C T G A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G C T C T A G A C G T A G T C C G A T A C G T
A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TGGCTTTATTTGTCTT
--NTTTTATTGG----
 A C G T A T C G A C T G A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G C T C T A G A C G T A G T C C G A T A C G T
A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTTTATTTGTCTT
NNAATTTTATTGGNTN-
 A C G T A C G T A T C G A C T G A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G C T C T A G A C G T A G T C C G A T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TGGCTTTATTTGTCTT
---TTTTATTRGN---
 A C G T A T C G A C T G A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G C T C T A G A C G T A G T C C G A T A C G T
A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTTTATTTGTCTT
NNANTTTTATTGGNNN-
 A C G T A C G T A T C G A C T G A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G C T C T A G A C G T A G T C C G A T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TGGCTTTATTTGTCTT----
----GNNATTTGTCGTAANN
 A C G T A T C G A C T G A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G C T C T A G A C G T A G T C C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

MF0005.1_Forkhead_class/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TGGCTTTATTTGTCTT
--TGTTTATTT-----
 A C G T A T C G A C T G A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G C T C T A G A C G T A G T C C G A T A C G T
A C G T A C G T G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T A C G T A C G T A C G T A C G T A C G T