Information for 10-ACTAGTTVAC (Motif 29)

C T G A A T G C A C G T C G T A A C T G A C G T A C G T T C G A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T C G T A G T C A A G T C A C G T C G T A T A C G A G C T
p-value:1e-5
log p-value:-1.295e+01
Information Content per bp:1.833
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif81.8
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets49.3 +/- 26.9bp
Average Position of motif in Background55.5 +/- 37.9bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---ACTAGTTVAC----
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T C T G A A T G C A C G T C G T A A C T G A C G T A C G T T C G A C G T A A G T C A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----ACTAGTTVAC---
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T C T G A A T G C A C G T C G T A A C T G A C G T A C G T T C G A C G T A A G T C A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:ACTAGTTVAC
ACTAGTTAAC
 C T G A A T G C A C G T C G T A A C T G A C G T A C G T T C G A C G T A A G T C
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PB0081.1_Tcf1_1/Jaspar

Match Rank:4
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGTTVAC-----
NNNTTAGTTAACTNANN
 A C G T A C G T C T G A A T G C A C G T C G T A A C T G A C G T A C G T T C G A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

PH0167.1_Tcf1/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGTTVAC-----
NTTTTAGTTAACNNAGN
 A C G T A C G T C T G A A T G C A C G T C G T A A C T G A C G T A C G T T C G A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACTAGTTVAC
TATAAGTAGGTCAA
 A C G T A C G T A C G T A C G T C T G A A T G C A C G T C G T A A C T G A C G T A C G T T C G A C G T A A G T C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ACTAGTTVAC
AAYTAGGTCA-
 A C G T C T G A A T G C A C G T C G T A A C T G A C G T A C G T T C G A C G T A A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

LBX1/MA0618.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ACTAGTTVAC
-CTAATTAA-
 C T G A A T G C A C G T C G T A A C T G A C G T A C G T T C G A C G T A A G T C
A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ACTAGTTVAC
--AAGGTCAC
 C T G A A T G C A C G T C G T A A C T G A C G T A C G T T C G A C G T A A G T C
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ACTAGTTVAC
ATCAAGGTCA-
 A C G T C T G A A T G C A C G T C G T A A C T G A C G T A C G T T C G A C G T A A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T