Information for 4-GGKKKGCSGGCTGSGS (Motif 11)

A C T G A C T G A C G T A C G T A C T G A C T G A G T C A T G C A T C G A C T G A T G C C A G T A C T G A T C G A C T G A T G C
Reverse Opposite:
A T C G G T A C A T G C A G T C G C T A A T C G A G T C A T G C A T C G A C T G A G T C G T A C G T C A G T C A A G T C A G T C
p-value:1e-10
log p-value:-2.500e+01
Information Content per bp:1.843
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.4 +/- 29.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GGKKKGCSGGCTGSGS--
---TCNCCTGCTGNGNNN
 A C T G A C T G A C G T A C G T A C T G A C T G A G T C A T G C A T C G A C T G A T G C C A G T A C T G A T C G A C T G A T G C A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GGKKKGCSGGCTGSGS--
---NNTCCTGCTGTGNNN
 A C T G A C T G A C G T A C G T A C T G A C T G A G T C A T G C A T C G A C T G A T G C C A G T A C T G A T C G A C T G A T G C A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GGKKKGCSGGCTGSGS--
---TNTCCTGCTGTGNNG
 A C T G A C T G A C G T A C G T A C T G A C T G A G T C A T G C A T C G A C T G A T G C C A G T A C T G A T C G A C T G A T G C A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GGKKKGCSGGCTGSGS
------CCTGCTGAGH
 A C T G A C T G A C G T A C G T A C T G A C T G A G T C A T G C A T C G A C T G A T G C C A G T A C T G A T C G A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGKKKGCSGGCTGSGS
-GGCCYCCTGCTGDGH
 A C T G A C T G A C G T A C G T A C T G A C T G A G T C A T G C A T C G A C T G A T G C C A G T A C T G A T C G A C T G A T G C
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GGKKKGCSGGCTGSGS
NAGANTGGCGGGGNGNA-
 A C G T A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C A T G C A T C G A C T G A T G C C A G T A C T G A T C G A C T G A T G C
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:GGKKKGCSGGCTGSGS
--------NGCTN---
 A C T G A C T G A C G T A C G T A C T G A C T G A G T C A T G C A T C G A C T G A T G C C A G T A C T G A T C G A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GGKKKGCSGGCTGSGS
----GGCGCGCT----
 A C T G A C T G A C G T A C G T A C T G A C T G A G T C A T G C A T C G A C T G A T G C C A G T A C T G A T C G A C T G A T G C
A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GGKKKGCSGGCTGSGS-
-----GGGGGCGGGGCC
 A C T G A C T G A C G T A C G T A C T G A C T G A G T C A T G C A T C G A C T G A T G C C A G T A C T G A T C G A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GGKKKGCSGGCTGSGS
---CCCCCTGCTGTG-
 A C T G A C T G A C G T A C G T A C T G A C T G A G T C A T G C A T C G A C T G A T G C C A G T A C T G A T C G A C T G A T G C
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T