Information for 12-AGTGGTGACTGAC (Motif 15)

T C G A T A C G A C G T C A T G C T A G A C G T T A C G C G T A T A G C C G A T A C T G C G T A T A G C
Reverse Opposite:
A T C G G A C T T G A C G C T A A T C G G C A T A T G C T G C A A G T C G A T C T G C A A G T C A C G T
p-value:1e-8
log p-value:-1.866e+01
Information Content per bp:1.645
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.78%
Number of Background Sequences with motif289.8
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets53.6 +/- 24.8bp
Average Position of motif in Background47.0 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AGTGGTGACTGAC---
----BTGABTGACAGS
 T C G A T A C G A C G T C A T G C T A G A C G T T A C G C G T A T A G C C G A T A C T G C G T A T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGTGGTGACTGAC-
--AGGTGHCAGACA
 T C G A T A C G A C G T C A T G C T A G A C G T T A C G C G T A T A G C C G A T A C T G C G T A T A G C A C G T
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

FOSL2/MA0478.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGTGGTGACTGAC
--GGATGACTCAT
 T C G A T A C G A C G T C A T G C T A G A C G T T A C G C G T A T A G C C G A T A C T G C G T A T A G C
A C G T A C G T A C T G T C A G C T G A A C G T A C T G T C G A A T G C A C G T G T A C C G T A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGTGGTGACTGAC--
--AGGTGNCAGACAG
 T C G A T A C G A C G T C A T G C T A G A C G T T A C G C G T A T A G C C G A T A C T G C G T A T A G C A C G T A C G T
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PB0142.1_Jundm2_2/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGTGGTGACTGAC---
ATTGATGAGTCACCAA
 T C G A T A C G A C G T C A T G C T A G A C G T T A C G C G T A T A G C C G A T A C T G C G T A T A G C A C G T A C G T A C G T
T G C A C A G T A C G T C T A G T C G A A G C T A C T G G T C A A T C G G A C T T G A C C T G A A G T C G T A C C T G A G T C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:AGTGGTGACTGAC---
----NTGATTGACAGN
 T C G A T A C G A C G T C A T G C T A G A C G T T A C G C G T A T A G C C G A T A C T G C G T A T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGTGGTGACTGAC--
-NAGGTCANTGACCT
 T C G A T A C G A C G T C A T G C T A G A C G T T A C G C G T A T A G C C G A T A C T G C G T A T A G C A C G T A C G T
A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

JUNB/MA0490.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGTGGTGACTGAC
--GGATGACTCAT
 T C G A T A C G A C G T C A T G C T A G A C G T T A C G C G T A T A G C C G A T A C T G C G T A T A G C
A C G T A C G T C A T G C T A G T C G A A C G T A C T G C G T A A T G C A C G T G T A C C G T A A C G T

FOSL1/MA0477.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGTGGTGACTGAC-
---GGTGACTCATG
 T C G A T A C G A C G T C A T G C T A G A C G T T A C G C G T A T A G C C G A T A C T G C G T A T A G C A C G T
A C G T A C G T A C G T C T A G T C A G A C G T A C T G C G T A T A G C A C G T G T A C C G T A A C G T T A C G

JUN(var.2)/MA0489.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTGGTGACTGAC
AGGAGATGACTCAT
 A C G T T C G A T A C G A C G T C A T G C T A G A C G T T A C G C G T A T A G C C G A T A C T G C G T A T A G C
C T G A C T A G C T A G C T G A C T A G T C G A A C G T A C T G C G T A A T G C C G A T G T A C C G T A A C G T