Information for 3-GATTTTGAATCCC (Motif 5)

A C T G C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A G T C A T G C A G T C
Reverse Opposite:
A C T G A T C G C T A G C G T A C G A T A C G T G T A C C G T A C G T A C G T A C G T A A C G T G T A C
p-value:1e-19
log p-value:-4.495e+01
Information Content per bp:1.906
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets53.0 +/- 15.0bp
Average Position of motif in Background58.6 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GATTTTGAATCCC
---TTTGAAACCG
 A C T G C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A G T C A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GATTTTGAATCCC
--ATTTGAATT--
 A C T G C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A G T C A T G C A G T C
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GATTTTGAATCCC-----
-NTTGTTAATCCCTCTNN
 A C T G C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A G T C A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

PH0122.1_Obox2/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GATTTTGAATCCC-----
-ATAGTTAATCCCCCTCA
 A C T G C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A G T C A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GATTTTGAATCCC----
GATAATTAATCCCTCTT
 A C T G C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A G T C A T G C A G T C A C G T A C G T A C G T A C G T
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GATTTTGAATCCC----
GANNATTAATCCCTNNN
 A C T G C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A G T C A T G C A G T C A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PH0124.1_Obox5_1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GATTTTGAATCCC----
NANANTTAATCCCNNNN
 A C T G C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A G T C A T G C A G T C A C G T A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PH0121.1_Obox1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GATTTTGAATCCC-----
-NTAGTTAATCCCCTTAN
 A C T G C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A G T C A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

PH0123.1_Obox3/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GATTTTGAATCCC-----
-ATAGTTAATCCCCCNNA
 A C T G C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A G T C A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PH0138.1_Pitx2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GATTTTGAATCCC----
GNNNATTAATCCCTNCN
 A C T G C G T A A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T A G T C A T G C A G T C A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A