Information for 22-CGCACCATTG (Motif 33)

T A G C C T A G A G T C T G C A A G T C A G T C C G T A A C G T C G A T A C T G
Reverse Opposite:
A G T C C G T A C G T A C G A T A C T G A C T G A C G T A C T G G A T C A C T G
p-value:1e-8
log p-value:-1.918e+01
Information Content per bp:1.808
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets62.3 +/- 19.0bp
Average Position of motif in Background40.1 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.75
Offset:4
Orientation:forward strand
Alignment:CGCACCATTG--
----CCTTTGTT
 T A G C C T A G A G T C T G C A A G T C A G T C C G T A A C G T C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.73
Offset:4
Orientation:forward strand
Alignment:CGCACCATTG--
----CCWTTGTY
 T A G C C T A G A G T C T G C A A G T C A G T C C G T A A C G T C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.70
Offset:4
Orientation:forward strand
Alignment:CGCACCATTG----
----CCATTGTTYB
 T A G C C T A G A G T C T G C A A G T C A G T C C G T A A C G T C G A T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CGCACCATTG----
----CCWTTGTYYB
 T A G C C T A G A G T C T G C A A G T C A G T C C G T A A C G T C G A T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

PB0137.1_Irf3_2/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CGCACCATTG---
NNGCACCTTTCTCC
 A C G T T A G C C T A G A G T C T G C A A G T C A G T C C G T A A C G T C G A T A C T G A C G T A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CGCACCATTG---
---NCCATTGTTY
 T A G C C T A G A G T C T G C A A G T C A G T C C G T A A C G T C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CGCACCATTG---
---NCCATTGTTC
 T A G C C T A G A G T C T G C A A G T C A G T C C G T A A C G T C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGCACCATTG------
TGTTCCCATTGTGTACT
 A C G T T A G C C T A G A G T C T G C A A G T C A G T C C G T A A C G T C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGCACCATTG------
-NNNCCATTGTGTNAN
 T A G C C T A G A G T C T G C A A G T C A G T C C G T A A C G T C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CGCACCATTG---
----CCATTGTTC
 T A G C C T A G A G T C T G C A A G T C A G T C C G T A A C G T C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C