Information for 20-AAGACACTTG (Motif 31)

C G T A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C T G
Reverse Opposite:
T A G C C G T A G T C A C T A G C G A T A C T G A C G T A G T C G A C T A C G T
p-value:1e-9
log p-value:-2.125e+01
Information Content per bp:1.846
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.35%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets39.6 +/- 27.1bp
Average Position of motif in Background44.4 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hes2/MA0616.1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AAGACACTTG-
TAACGACACGTGC
 A C G T A C G T C G T A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C T G A C G T
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C

PH0171.1_Nkx2-1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAGACACTTG-----
TAAGCCACTTGAAATT
 A C G T C G T A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0113.1_Nkx2-4/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAGACACTTG-----
TAAGCCACTTGAAATT
 A C G T C G T A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Npas2/MA0626.1/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AAGACACTTG--
--NACACGTGCN
 C G T A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C

NKX2-8/MA0673.1/Jaspar

Match Rank:5
Score:0.68
Offset:3
Orientation:forward strand
Alignment:AAGACACTTG--
---CCACTTGAA
 C G T A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AAGACACTTG--
--ACCACTTGAA
 C G T A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C T G A C G T A C G T
A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

CLOCK/MA0819.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AAGACACTTG--
--AACACGTGTT
 C G T A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C T G A C G T A C G T
A C G T A C G T C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T

HEY2/MA0649.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AAGACACTTG--
--GACACGTGCC
 C G T A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C T G A C G T A C G T
A C G T A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AAGACACTTG
--GHCACGTG
 C G T A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C T G
A C G T A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAGACACTTG------
ATAACCACTTGAAAATT
 A C G T C G T A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T