Information for 3-CGGTTTGAAT (Motif 3)

A G T C A C T G C T A G A C G T A C G T A C G T A C T G C T G A C T G A C G A T
Reverse Opposite:
C G T A A G C T A G C T A G T C G T C A C G T A C G T A A G T C T A G C A C T G
p-value:1e-23
log p-value:-5.454e+01
Information Content per bp:1.842
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.7 +/- 22.4bp
Average Position of motif in Background49.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:forward strand
Alignment:CGGTTTGAAT-
--ATTTGAATT
 A G T C A C T G C T A G A C G T A C G T A C G T A C T G C T G A C T G A C G A T A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:CGGTTTGAAT---
---TTTGAAACCG
 A G T C A C T G C T A G A C G T A C G T A C G T A C T G C T G A C T G A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

TBX21/MA0690.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGGTTTGAAT
AAGGTGTGAA-
 A C G T A G T C A C T G C T A G A C G T A C G T A C G T A C T G C T G A C T G A C G A T
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGGTTTGAAT
TGGTTTCAGT
 A G T C A C T G C T A G A C G T A C G T A C G T A C T G C T G A C T G A C G A T
G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

PB0013.1_Eomes_1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CGGTTTGAAT---
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T A C G T A G T C A C T G C T A G A C G T A C G T A C G T A C T G C T G A C T G A C G A T A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CGGTTTGAAT--
--ATTTGCATAA
 A G T C A C T G C T A G A C G T A C G T A C G T A C T G C T G A C T G A C G A T A C G T A C G T
A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

TBX20/MA0689.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGGTTTGAAT
TAGGTGTGAAG
 A C G T A G T C A C T G C T A G A C G T A C G T A C G T A C T G C T G A C T G A C G A T
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

TBR1/MA0802.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGGTTTGAAT
AGGTGTGAAA
 A G T C A C T G C T A G A C G T A C G T A C G T A C T G C T G A C T G A C G A T
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGGTTTGAAT-----
NNNTATTGAATTGNNN
 A C G T A G T C A C T G C T A G A C G T A C G T A C G T A C T G C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGGTTTGAAT-
--ATTTGCATA
 A G T C A C T G C T A G A C G T A C G T A C G T A C T G C T G A C T G A C G A T A C G T
A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A