Information for 15-ATCTCTCACA (Motif 24)

C G T A A C G T A G T C A C G T G T A C A C G T A G T C C G T A A G T C G T C A
Reverse Opposite:
A C G T A C T G C G A T A C T G C G T A A C T G C G T A A C T G C G T A A C G T
p-value:1e-10
log p-value:-2.321e+01
Information Content per bp:1.921
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets64.5 +/- 19.7bp
Average Position of motif in Background39.3 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATCTCTCACA
GYCATCMATCAT-
 A C G T A C G T A C G T C G T A A C G T A G T C A C G T G T A C A C G T A G T C C G T A A G T C G T C A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATCTCTCACA
TCATCAATCA--
 A C G T A C G T C G T A A C G T A G T C A C G T G T A C A C G T A G T C C G T A A G T C G T C A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATCTCTCACA-
CTGTCTGTCACCT
 A C G T A C G T C G T A A C G T A G T C A C G T G T A C A C G T A G T C C G T A A G T C G T C A A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ATCTCTCACA-
TGTCTGDCACCT
 A C G T C G T A A C G T A G T C A C G T G T A C A C G T A G T C C G T A A G T C G T C A A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----ATCTCTCACA
RGCCATYAATCA--
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T G T A C A C G T A G T C C G T A A G T C G T C A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ATCTCTCACA
CCATCAATCAAA
 A C G T A C G T C G T A A C G T A G T C A C G T G T A C A C G T A G T C C G T A A G T C G T C A
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ATCTCTCACA--
AAAGACCTGTCAATCC
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T G T A C A C G T A G T C C G T A A G T C G T C A A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ATCTCTCACA--
AACTAGCTGTCAATAC
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T G T A C A C G T A G T C C G T A A G T C G T C A A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ATCTCTCACA--
GAAGATCAATCACTTA
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T G T A C A C G T A G T C C G T A A G T C G T C A A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

PH0102.1_Meis1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ATCTCTCACA--
AACGAGCTGTCAATAC
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T G T A C A C G T A G T C C G T A A G T C G T C A A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C