Information for 2-TTTAYTTTYAAAA (Motif 2)

A C G T A C G T C G A T C G T A G A T C C A G T A C G T A C G T A G T C T G C A C G T A C G T A C T G A
Reverse Opposite:
A G C T A C G T A C G T A C G T C T A G C G T A C G T A G C T A C T A G A C G T C G T A T C G A C G T A
p-value:1e-25
log p-value:-5.935e+01
Information Content per bp:1.818
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.35%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.2 +/- 20.3bp
Average Position of motif in Background59.5 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TTTAYTTTYAAAA
----NATTCAAAT
 A C G T A C G T C G A T C G T A G A T C C A G T A C G T A C G T A G T C T G C A C G T A C G T A C T G A
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TTTAYTTTYAAAA
--CGGTTTCAAA-
 A C G T A C G T C G A T C G T A G A T C C A G T A C G T A C G T A G T C T G C A C G T A C G T A C T G A
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTTAYTTTYAAAA-
TTCTATTTTTAGNNN
 A C G T A C G T A C G T C G A T C G T A G A T C C A G T A C G T A C G T A G T C T G C A C G T A C G T A C T G A A C G T
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTTAYTTTYAAAA
TGTTTACTTT-----
 A C G T A C G T A C G T A C G T C G A T C G T A G A T C C A G T A C G T A C G T A G T C T G C A C G T A C G T A C T G A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTTAYTTTYAAAA
NNNNTTTTTTTTTNAAC
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A G A T C C A G T A C G T A C G T A G T C T G C A C G T A C G T A C T G A
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTTAYTTTYAAAA
TGTTTACTTT-----
 A C G T A C G T A C G T A C G T C G A T C G T A G A T C C A G T A C G T A C G T A G T C T G C A C G T A C G T A C T G A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTTAYTTTYAAAA-
AATATTAATAAAGA
 A C G T A C G T C G A T C G T A G A T C C A G T A C G T A C G T A G T C T G C A C G T A C G T A C T G A A C G T
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A

MF0005.1_Forkhead_class/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TTTAYTTTYAAAA
TGTTTATTT------
 A C G T A C G T A C G T A C G T C G A T C G T A G A T C C A G T A C G T A C G T A G T C T G C A C G T A C G T A C T G A
G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTTAYTTTYAAAA
KCTATTTTTRGH-
 A C G T A C G T C G A T C G T A G A T C C A G T A C G T A C G T A G T C T G C A C G T A C G T A C T G A
C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTTAYTTTYAAAA
TTAATGTTTAACC
 A C G T A C G T C G A T C G T A G A T C C A G T A C G T A C G T A G T C T G C A C G T A C G T A C T G A
A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C