Information for 6-MCTTSAKGCCSGSARC (Motif 4)

T G A C A T G C G A C T A G C T T A C G T G C A C A G T A T C G A G T C A G T C T A G C T A C G T A C G T G C A C T G A A T G C
Reverse Opposite:
T A C G A G C T A C G T A T G C A G T C A T C G C T A G A C T G A T G C G T C A A C G T A T G C T C G A C T G A A T C G A C T G
p-value:1e-16
log p-value:-3.842e+01
Information Content per bp:1.636
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.3 +/- 15.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.54
Offset:5
Orientation:forward strand
Alignment:MCTTSAKGCCSGSARC
-----CTGCCCGCA--
 T G A C A T G C G A C T A G C T T A C G T G C A C A G T A T C G A G T C A G T C T A G C T A C G T A C G T G C A C T G A A T G C
A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.52
Offset:5
Orientation:forward strand
Alignment:MCTTSAKGCCSGSARC
-----ATGCCCACC--
 T G A C A T G C G A C T A G C T T A C G T G C A C A G T A T C G A G T C A G T C T A G C T A C G T A C G T G C A C T G A A T G C
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.52
Offset:5
Orientation:forward strand
Alignment:MCTTSAKGCCSGSARC
-----CTTCCNGGAA-
 T G A C A T G C G A C T A G C T T A C G T G C A C A G T A T C G A G T C A G T C T A G C T A C G T A C G T G C A C T G A A T G C
A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:MCTTSAKGCCSGSARC--
----CAGGCCNNGGCCNN
 T G A C A T G C G A C T A G C T T A C G T G C A C A G T A T C G A G T C A G T C T A G C T A C G T A C G T G C A C T G A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ELK4/MA0076.2/Jaspar

Match Rank:5
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:MCTTSAKGCCSGSARC--
-------NCCGGAAGTGG
 T G A C A T G C G A C T A G C T T A C G T G C A C A G T A T C G A G T C A G T C T A G C T A C G T A C G T G C A C T G A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A G C G T A C A C T G A C T G C G T A C G T A T C A G G A C T T A C G T A C G

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.49
Offset:6
Orientation:forward strand
Alignment:MCTTSAKGCCSGSARC
------GGCGGGAAAH
 T G A C A T G C G A C T A G C T T A C G T G C A C A G T A T C G A G T C A G T C T A G C T A C G T A C G T G C A C T G A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T

TFAP2A/MA0003.3/Jaspar

Match Rank:7
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-MCTTSAKGCCSGSARC
CGCCTCAGGCA------
 A C G T T G A C A T G C G A C T A G C T T A C G T G C A C A G T A T C G A G T C A G T C T A G C T A C G T A C G T G C A C T G A A T G C
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer

Match Rank:8
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:MCTTSAKGCCSGSARC
ACTTCCGGTN------
 T G A C A T G C G A C T A G C T T A C G T G C A C A G T A T C G A G T C A G T C T A G C T A C G T A C G T G C A C T G A A T G C
T C G A A G T C G C A T G C A T A T G C A G T C A C T G A T C G A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.48
Offset:10
Orientation:reverse strand
Alignment:MCTTSAKGCCSGSARC
----------CGGAGC
 T G A C A T G C G A C T A G C T T A C G T G C A C A G T A T C G A G T C A G T C T A G C T A C G T A C G T G C A C T G A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---MCTTSAKGCCSGSARC
ATGCCCTGAGGC-------
 A C G T A C G T A C G T T G A C A T G C G A C T A G C T T A C G T G C A C A G T A T C G A G T C A G T C T A G C T A C G T A C G T G C A C T G A A T G C
G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T