Information for 9-CTGAGTTCAAAAC (Motif 11)

A G T C A C G T A C T G C G T A C T A G A C G T A G C T A G T C C G T A C G T A C G T A C G T A G T A C
Reverse Opposite:
C A T G C G A T G A C T C G A T C G A T C T A G C T G A G T C A A G T C C G A T T G A C C G T A A C T G
p-value:1e-10
log p-value:-2.518e+01
Information Content per bp:1.744
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif49.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets44.1 +/- 27.8bp
Average Position of motif in Background42.2 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGAGTTCAAAAC
---NATTCAAAT-
 A G T C A C G T A C T G C G T A C T A G A C G T A G C T A G T C C G T A C G T A C G T A C G T A G T A C
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTGAGTTCAAAAC
GGACTGAATTCATGCC
 A C G T A C G T A C G T A G T C A C G T A C T G C G T A C T A G A C G T A G C T A G T C C G T A C G T A C G T A C G T A G T A C
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTGAGTTCAAAAC
-TRAGGTCA----
 A G T C A C G T A C T G C G T A C T A G A C G T A G C T A G T C C G T A C G T A C G T A C G T A G T A C
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGAGTTCAAAAC
YCTTTGTTCC----
 A C G T A G T C A C G T A C T G C G T A C T A G A C G T A G C T A G T C C G T A C G T A C G T A C G T A G T A C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CTGAGTTCAAAAC
NNNTCCTTTGTTCTNNN-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A C T A G A C G T A G C T A G T C C G T A C G T A C G T A C G T A G T A C
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T A C G T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTGAGTTCAAAAC
NRRTGACGTCAT---
 A C G T A C G T A G T C A C G T A C T G C G T A C T A G A C G T A G C T A G T C C G T A C G T A C G T A C G T A G T A C
A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CTGAGTTCAAAAC
---ACATCAAAGG
 A G T C A C G T A C T G C G T A C T A G A C G T A G C T A G T C C G T A C G T A C G T A C G T A G T A C
A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

PB0068.1_Sox1_1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTGAGTTCAAAAC--
AATCAATTCAATAATT
 A C G T A G T C A C G T A C T G C G T A C T A G A C G T A G C T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTGAGTTCAAAAC------
---ATATCAAAACAAAACA
 A G T C A C G T A C T G C G T A C T A G A C G T A G C T A G T C C G T A C G T A C G T A C G T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----CTGAGTTCAAAAC
TNNTCCTTTGTTCTNNT-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A C T A G A C G T A G C T A G T C C G T A C G T A C G T A C G T A G T A C
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T A C G T