Information for 8-CGCTGGCCAATKG (Motif 9)

G T A C A C T G A T G C A C G T A C T G C T A G A G T C G T A C C G T A T G C A A C G T A C G T A C T G
Reverse Opposite:
A G T C G T C A C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A T C G T A G C A C T G
p-value:1e-13
log p-value:-3.049e+01
Information Content per bp:1.836
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.3 +/- 25.2bp
Average Position of motif in Background50.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.72
Offset:4
Orientation:forward strand
Alignment:CGCTGGCCAATKG-
----AGCCAATCGG
 G T A C A C T G A T G C A C G T A C T G C T A G A G T C G T A C C G T A T G C A A C G T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGCTGGCCAATKG
-ACTAGCCAATCA
 G T A C A C T G A T G C A C G T A C T G C T A G A G T C G T A C C G T A T G C A A C G T A C G T A C T G
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CGCTGGCCAATKG-
ACCGTGACTAATTNN
 A C G T G T A C A C T G A T G C A C G T A C T G C T A G A G T C G T A C C G T A T G C A A C G T A C G T A C T G A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGCTGGCCAATKG-----
-NNTNNACAATGGGANNN
 G T A C A C T G A T G C A C G T A C T G C T A G A G T C G T A C C G T A T G C A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CGCTGGCCAATKG---
--NTGCCCANNGGTNA
 G T A C A C T G A T G C A C G T A C T G C T A G A G T C G T A C C G T A T G C A A C G T A C G T A C T G A C G T A C G T A C G T
A C G T A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGCTGGCCAATKG-
AAATGGACCAATCAG
 A C G T G T A C A C T G A T G C A C G T A C T G C T A G A G T C G T A C C G T A T G C A A C G T A C G T A C T G A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CGCTGGCCAATKG
----TGCCAA---
 G T A C A C T G A T G C A C G T A C T G C T A G A G T C G T A C C G T A T G C A A C G T A C G T A C T G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CGCTGGCCAATKG
----GAACAATGG
 G T A C A C T G A T G C A C G T A C T G C T A G A G T C G T A C C G T A T G C A A C G T A C G T A C T G
A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CGCTGGCCAATKG-
----GAACAATGGN
 G T A C A C T G A T G C A C G T A C T G C T A G A G T C G T A C C G T A T G C A A C G T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CGCTGGCCAATKG------
--ATAACCACTTGAAAATT
 G T A C A C T G A T G C A C G T A C T G C T A G A G T C G T A C C G T A T G C A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T