Information for 9-GAAAGGCARAMACYST (Motif 19)

A T C G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G C T G A G T A C C G T A A G T C G A C T A T G C A C G T
Reverse Opposite:
C G T A A T C G C T A G A C T G A C G T A C T G A G C T G A C T A C G T A C T G A G T C A G T C A C G T A C G T A C G T A T G C
p-value:1e-10
log p-value:-2.472e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.8 +/- 21.9bp
Average Position of motif in Background80.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAAAGGCARAMACYST-
-AGCGGCACACACGCAA
 A T C G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G C T G A G T A C C G T A A G T C G A C T A T G C A C G T A C G T
A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:2
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAAAGGCARAMACYST
--WAAGTAAAYA----
 A T C G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G C T G A G T A C C G T A A G T C G A C T A T G C A C G T
A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAAAGGCARAMACYST
AAAAGTCAA-------
 A T C G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G C T G A G T A C C G T A A G T C G A C T A T G C A C G T
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GAAAGGCARAMACYST
--AAGGCAAGTGT---
 A T C G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G C T G A G T A C C G T A A G T C G A C T A T G C A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GAAAGGCARAMACYST-
-CGAAGCACACAAAATA
 A T C G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G C T G A G T A C C G T A A G T C G A C T A T G C A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GAAAGGCARAMACYST
GAAACTGAAACT----
 A T C G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G C T G A G T A C C G T A A G T C G A C T A T G C A C G T
T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GAAAGGCARAMACYST
--AAAGTAAACA----
 A T C G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G C T G A G T A C C G T A A G T C G A C T A T G C A C G T
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GAAAGGCARAMACYST
--AAAGTAAACA----
 A T C G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G C T G A G T A C C G T A A G T C G A C T A T G C A C G T
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T

FOXF2/MA0030.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAAAGGCARAMACYST
CAAACGTAAACAAT--
 A T C G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G C T G A G T A C C G T A A G T C G A C T A T G C A C G T
A G T C G T C A G C T A C G T A T A G C C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A C G A T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GAAAGGCARAMACYST
GAAAGTGAAAGT----
 A T C G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G C T G A G T A C C G T A A G T C G A C T A T G C A C G T
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T A C G T A C G T A C G T