Information for 1-NNRACAAWGG (Motif 1)

G T C A T A C G T C G A C G T A A T G C C G T A G T C A C G A T C T A G T C A G
Reverse Opposite:
A G T C G A T C C G T A C A G T A C G T T A C G A C G T A G C T A G T C C A G T
p-value:1e-124
log p-value:-2.861e+02
Information Content per bp:1.616
Number of Target Sequences with motif340.0
Percentage of Target Sequences with motif38.90%
Number of Background Sequences with motif4245.3
Percentage of Background Sequences with motif9.07%
Average Position of motif in Targets48.8 +/- 22.5bp
Average Position of motif in Background49.8 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.97
Offset:2
Orientation:reverse strand
Alignment:NNRACAAWGG
--RACAAWGG
 G T C A T A C G T C G A C G T A A T G C C G T A G T C A C G A T C T A G T C A G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:NNRACAAWGG
RNAACAATGG
 G T C A T A C G T C G A C G T A A T G C C G T A G T C A C G A T C T A G T C A G
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.96
Offset:1
Orientation:forward strand
Alignment:NNRACAAWGG-
-RAACAATGGN
 G T C A T A C G T C G A C G T A A T G C C G T A G T C A C G A T C T A G T C A G A C G T
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:NNRACAAWGG
VRRACAAWGG
 G T C A T A C G T C G A C G T A A T G C C G T A G T C A C G A T C T A G T C A G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:NNRACAAWGG
VRAACAATGG
 G T C A T A C G T C G A C G T A A T G C C G T A G T C A C G A T C T A G T C A G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:NNRACAAWGG-
-GAACAATGGN
 G T C A T A C G T C G A C G T A A T G C C G T A G T C A C G A T C T A G T C A G A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:NNRACAAWGG
--AACAAAGG
 G T C A T A C G T C G A C G T A A T G C C G T A G T C A C G A T C T A G T C A G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:NNRACAAWGG
AAAACAATGG
 G T C A T A C G T C G A C G T A A T G C C G T A G T C A C G A T C T A G T C A G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--NNRACAAWGG---
CTCACACAATGGCGC
 A C G T A C G T G T C A T A C G T C G A C G T A A T G C C G T A G T C A C G A T C T A G T C A G A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.91
Offset:2
Orientation:reverse strand
Alignment:NNRACAAWGG
--AACAAT--
 G T C A T A C G T C G A C G T A A T G C C G T A G T C A C G A T C T A G T C A G
A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T