Information for 3-GGGACCAGAGGCHAGA (Motif 9)

C T A G A C T G A C T G T G C A A G T C A T G C C T G A A T C G C G T A A C T G C T A G A T G C G C T A C T G A A C T G T C G A
Reverse Opposite:
A C G T A G T C A G C T C A G T A T C G A G T C G T A C A C G T A T G C A G C T A T C G A C T G A C G T A G T C A G T C A G T C
p-value:1e-11
log p-value:-2.747e+01
Information Content per bp:1.856
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets20.1 +/- 12.6bp
Average Position of motif in Background50.8 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGGACCAGAGGCHAGA
AGAGTCCAAAGTCCA--
 A C G T C T A G A C T G A C T G T G C A A G T C A T G C C T G A A T C G C G T A A C T G C T A G A T G C G C T A C T G A A C T G T C G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGGACCAGAGGCHAGA
NTGCCCANNGGTNA--
 C T A G A C T G A C T G T G C A A G T C A T G C C T G A A T C G C G T A A C T G C T A G A T G C G C T A C T G A A C T G T C G A
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGGACCAGAGGCHAGA
CANAGNNCAAAGTCCA--
 A C G T A C G T C T A G A C T G A C T G T G C A A G T C A T G C C T G A A T C G C G T A A C T G C T A G A T G C G C T A C T G A A C T G T C G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGGACCAGAGGCHAGA
TGGAACAGMA------
 C T A G A C T G A C T G T G C A A G T C A T G C C T G A A T C G C G T A A C T G C T A G A T G C G C T A C T G A A C T G T C G A
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GGGACCAGAGGCHAGA
NNAGGGACAAGGGCNC---
 A C G T A C G T A C G T C T A G A C T G A C T G T G C A A G T C A T G C C T G A A T C G C G T A A C T G C T A G A T G C G C T A C T G A A C T G T C G A
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GGGACCAGAGGCHAGA
CAAATCCAGACATCACA
 A C G T C T A G A C T G A C T G T G C A A G T C A T G C C T G A A T C G C G T A A C T G C T A G A T G C G C T A C T G A A C T G T C G A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GGGACCAGAGGCHAGA
----CCAGACRSVB--
 C T A G A C T G A C T G T G C A A G T C A T G C C T G A A T C G C G T A A C T G C T A G A T G C G C T A C T G A A C T G T C G A
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GGGACCAGAGGCHAGA
NWAACCACADNN----
 C T A G A C T G A C T G T G C A A G T C A T G C C T G A A T C G C G T A A C T G C T A G A T G C G C T A C T G A A C T G T C G A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GGGACCAGAGGCHAGA
-VNAVCAGCTGGC---
 C T A G A C T G A C T G T G C A A G T C A T G C C T G A A T C G C G T A A C T G C T A G A T G C G C T A C T G A A C T G T C G A
A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T A C G T A C G T

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:GGGACCAGAGGCHAGA
---TCCAGATGTT---
 C T A G A C T G A C T G T G C A A G T C A T G C C T G A A T C G C G T A A C T G C T A G A T G C G C T A C T G A A C T G T C G A
A C G T A C G T A C G T A C G T T G A C A G T C C G T A A T C G G T C A A C G T A T C G A G C T A C G T A C G T A C G T A C G T