Information for 5-CCCTCTGCAGCGC (Motif 8)

A G T C A G T C A G T C A C G T A G T C A C G T A T C G G T A C C G T A A C T G G T A C C T A G A G T C
Reverse Opposite:
A C T G A G T C A C T G G T A C A C G T A C T G A T G C C G T A A C T G C G T A A C T G A C T G A C T G
p-value:1e-13
log p-value:-3.013e+01
Information Content per bp:1.903
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.2 +/- 23.5bp
Average Position of motif in Background52.5 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC3/MA0697.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCAGCGC
GACCCCCCGCTGCGC
 A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G G T A C C G T A A C T G G T A C C T A G A G T C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCAGCGC
GACCCCCCGCTGTGC
 A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G G T A C C G T A A C T G G T A C C T A G A G T C
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCCTCTGCAGCGC-
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G G T A C C G T A A C T G G T A C C T A G A G T C A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCAGCGC
GACCCCCCGCTGTG-
 A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G G T A C C G T A A C T G G T A C C T A G A G T C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCCTCTGCAGCGC
NSCACTYVAV---
 A G T C A G T C A G T C A C G T A G T C A C G T A T C G G T A C C G T A A C T G G T A C C T A G A G T C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCAGCGC
GGCCYCCTGCTGDGH
 A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G G T A C C G T A A C T G G T A C C T A G A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------CCCTCTGCAGCGC
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G G T A C C G T A A C T G G T A C C T A G A G T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCCTCTGCAGCGC
CCCCCTGCTGTG-
 A G T C A G T C A G T C A C G T A G T C A C G T A T C G G T A C C G T A A C T G G T A C C T A G A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCCTCTGCAGCGC
GCCATCTGTT----
 A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G G T A C C G T A A C T G G T A C C T A G A G T C
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T A C G T

GLIS2/MA0736.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCAGCGC
GACCCCCCGCGAAG-
 A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G G T A C C G T A A C T G G T A C C T A G A G T C
A C T G T C G A A G T C G T A C G A T C G T A C G T A C G A T C C T A G A G T C C T A G C T G A G T C A A T C G A C G T