Information for 5-GGTGTCCTAC (Motif 8)

A C T G A C T G C G A T A T C G A G C T A G T C A G T C G A C T C G T A A G T C
Reverse Opposite:
A C T G C G A T C T G A C T A G A C T G C T G A A T G C C G T A T G A C A G T C
p-value:1e-10
log p-value:-2.328e+01
Information Content per bp:1.827
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif68.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets46.3 +/- 24.4bp
Average Position of motif in Background49.7 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0164.1_Six4/Jaspar

Match Rank:1
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGTCCTAC--
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G A T A T C G A G C T A G T C A G T C G A C T C G T A A G T C A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGTGTCCTAC
-GTGACCTT-
 A C T G A C T G C G A T A T C G A G C T A G T C A G T C G A C T C G T A A G T C
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGTGTCCTAC---
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T A C T G A C T G C G A T A T C G A G C T A G T C A G T C G A C T C G T A A G T C A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGTGTCCTAC-----
-TTGACCTANTTATN
 A C T G A C T G C G A T A T C G A G C T A G T C A G T C G A C T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGTGTCCTAC--
--TGACCTARTT
 A C T G A C T G C G A T A T C G A G C T A G T C A G T C G A C T C G T A A G T C A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

PB0114.1_Egr1_2/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGTGTCCTAC------
NNAGTCCCACTCNNNN
 A C T G A C T G C G A T A T C G A G C T A G T C A G T C G A C T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGTGTCCTAC
AGGTGTCA---
 A C G T A C T G A C T G C G A T A T C G A G C T A G T C A G T C G A C T C G T A A G T C
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGTGTCCTAC
--TGACCT--
 A C T G A C T G C G A T A T C G A G C T A G T C A G T C G A C T C G T A A G T C
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGTGTCCTAC-
AGGTGHCAGACA
 A C G T A C T G A C T G C G A T A T C G A G C T A G T C A G T C G A C T C G T A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGTGTCCTAC--
AGGTGNCAGACAG
 A C G T A C T G A C T G C G A T A T C G A G C T A G T C A G T C G A C T C G T A A G T C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G