Information for 2-GGCTTTTTGCCCC (Motif 3)

A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T A C A G T C A T G C T A G C
Reverse Opposite:
A C T G A T C G A C T G A C T G A G T C G T C A T C G A C G T A C G T A C G T A A C T G A G T C A G T C
p-value:1e-13
log p-value:-3.057e+01
Information Content per bp:1.890
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.5 +/- 17.9bp
Average Position of motif in Background27.8 +/- 10.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.83
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGCTTTTTGCCCC
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T A C A G T C A T G C T A G C
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GGCTTTTTGCCCC
TTGGCATGGTGCCA-
 A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T A C A G T C A T G C T A G C
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGCTTTTTGCCCC
CTGGCAGNCTGCCA-
 A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T A C A G T C A T G C T A G C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGCTTTTTGCCCC---
-WCATTTTGKCCTCYT
 A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T A C A G T C A T G C T A G C A C G T A C G T A C G T
A C G T C G T A G A T C C T G A A C G T A C G T A C G T C A G T C T A G A C G T G T A C G T A C G A C T A G T C G A T C A C G T

Rarg/MA0859.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGCTTTTTGCCCC-
TTGACCTTTTGACCTT
 A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T A C A G T C A T G C T A G C A C G T
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

Rarb/MA0857.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGCTTTTTGCCCC--
TGACCTTTTGACCTTT
 A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T A C A G T C A T G C T A G C A C G T A C G T
G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGCTTTTTGCCCC
-YCTTTGTTCC--
 A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T A C A G T C A T G C T A G C
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGCTTTTTGCCCC-
TGACCTTTTGACCTC
 A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T A C A G T C A T G C T A G C A C G T
A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGCTTTTTGCCCC
-CCWTTGTYYB--
 A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T A C A G T C A T G C T A G C
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T

RARA/MA0729.1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GGCTTTTTGCCCC-
CATTGACCTTTTGACCTC
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G G T A C A G T C A T G C T A G C A C G T
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C