Information for 9-GAAGCCCAGCTTG (Motif 20)

A T C G C G T A C G T A A C T G A G T C A G T C A G T C C G T A A C T G A G T C C G A T A C G T A C T G
Reverse Opposite:
A G T C C G T A G C T A A C T G A G T C A C G T A C T G A C T G C T A G G T A C A C G T A C G T A T G C
p-value:1e-7
log p-value:-1.790e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.6 +/- 19.6bp
Average Position of motif in Background44.7 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAAGCCCAGCTTG---
-GAGCACAGCAGGACA
 A T C G C G T A C G T A A C T G A G T C A G T C A G T C C G T A A C T G A G T C C G A T A C G T A C T G A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAAGCCCAGCTTG---
-CCACACAGCAGGAGA
 A T C G C G T A C G T A A C T G A G T C A G T C A G T C C G T A A C T G A G T C C G A T A C G T A C T G A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GAAGCCCAGCTTG
---DCTCAGCAGG
 A T C G C G T A C G T A A C T G A G T C A G T C A G T C C G T A A C T G A G T C C G A T A C G T A C T G
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GAAGCCCAGCTTG
--TGCCCAGNHW-
 A T C G C G T A C G T A A C T G A G T C A G T C A G T C C G T A A C T G A G T C C G A T A C G T A C T G
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAAGCCCAGCTTG
GAGSCCGAGC---
 A T C G C G T A C G T A A C T G A G T C A G T C A G T C C G T A A C T G A G T C C G A T A C G T A C T G
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAAGCCCAGCTTG---
-CCACACAGCAGGAGA
 A T C G C G T A C G T A A C T G A G T C A G T C A G T C C G T A A C T G A G T C C G A T A C G T A C T G A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAAGCCCAGCTTG-----
---DCHCAGCAGGRGGCC
 A T C G C G T A C G T A A C T G A G T C A G T C A G T C C G T A A C T G A G T C C G A T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Gfi1b/MA0483.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAAGCCCAGCTTG
AAATCACAGCA--
 A T C G C G T A C G T A A C T G A G T C A G T C A G T C C G T A A C T G A G T C C G A T A C G T A C T G
T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAAGCCCAGCTTG---
GCAGCCAAGCGTGACN
 A T C G C G T A C G T A A C T G A G T C A G T C A G T C C G T A A C T G A G T C C G A T A C G T A C T G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAAGCCCAGCTTG
AAATCACTGC---
 A T C G C G T A C G T A A C T G A G T C A G T C A G T C C G T A A C T G A G T C C G A T A C G T A C T G
T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T A C G T A C G T