Information for 1-YYGCCTTATATGGGGA (Motif 1)

A G C T A G C T A T C G A G T C A G T C A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A C T G T A C G C G T A
Reverse Opposite:
C G A T A T G C T G A C A G T C A G T C C G T A A C G T C G T A C G A T C G T A C G T A A C T G A C T G T A G C T C G A C T G A
p-value:1e-21
log p-value:-4.880e+01
Information Content per bp:1.838
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.7 +/- 12.6bp
Average Position of motif in Background60.7 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SRF/MA0083.3/Jaspar

Match Rank:1
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:YYGCCTTATATGGGGA
TGNCCATATATGGTCA
 A G C T A G C T A T C G A G T C A G T C A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A C T G T A C G C G T A
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:2
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:YYGCCTTATATGGGGA
-TNCCATATATGG---
 A G C T A G C T A T C G A G T C A G T C A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A C T G T A C G C G T A
A C G T C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T A C G T A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:YYGCCTTATATGGGGA
-TNCCATATATGGNA-
 A G C T A G C T A T C G A G T C A G T C A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A C T G T A C G C G T A
A C G T C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.73
Offset:3
Orientation:forward strand
Alignment:YYGCCTTATATGGGGA
---CCTTTTATAGNC-
 A G C T A G C T A T C G A G T C A G T C A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A C T G T A C G C G T A
A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.72
Offset:3
Orientation:forward strand
Alignment:YYGCCTTATATGGGGA
---CCATATATGG---
 A G C T A G C T A T C G A G T C A G T C A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A C T G T A C G C G T A
A C G T A C G T A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.64
Offset:5
Orientation:forward strand
Alignment:YYGCCTTATATGGGGA
-----TTTTATKRGG-
 A G C T A G C T A T C G A G T C A G T C A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A C T G T A C G C G T A
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

PB0184.1_Tbp_2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-YYGCCTTATATGGGGA
GNNCGCTTAAATCGG--
 A C G T A G C T A G C T A T C G A G T C A G T C A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A C T G T A C G C G T A
C A T G T A C G C A G T G T A C A T C G T A G C C G A T C A G T C G T A C G T A C T G A G C A T A T G C T A C G A C T G A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--YYGCCTTATATGGGGA
NNNNNNCTTTTATAN---
 A C G T A C G T A G C T A G C T A T C G A G T C A G T C A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A C T G T A C G C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--YYGCCTTATATGGGGA
NNNNNNCTTTTATAN---
 A C G T A C G T A G C T A G C T A T C G A G T C A G T C A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A C T G T A C G C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YYGCCTTATATGGGGA
--NCCTTATCTG----
 A G C T A G C T A T C G A G T C A G T C A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A C T G T A C G C G T A
A C G T A C G T A G C T A G T C A T G C A C G T A C G T C G T A A C G T A G T C C G A T A T C G A C G T A C G T A C G T A C G T