Information for 5-YTAYAGTCAC (Motif 28)

A G C T A G C T G T C A A G T C C G T A A T C G C A G T G T A C C G T A G T A C
Reverse Opposite:
A C T G C G A T A C T G G T C A A T G C C G A T T C A G A C G T C T G A T C G A
p-value:1e-8
log p-value:-1.867e+01
Information Content per bp:1.752
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif77.1
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets45.7 +/- 25.4bp
Average Position of motif in Background40.5 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:YTAYAGTCAC--
----AGTCACGC
 A G C T A G C T G T C A A G T C C G T A A T C G C A G T G T A C C G T A G T A C A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-YTAYAGTCAC
CTCATTGTC--
 A C G T A G C T A G C T G T C A A G T C C G T A A T C G C A G T G T A C C G T A G T A C
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:YTAYAGTCAC
---NTGTCAN
 A G C T A G C T G T C A A G T C C G T A A T C G C A G T G T A C C G T A G T A C
A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YTAYAGTCAC
-AAAAGTCAA
 A G C T A G C T G T C A A G T C C G T A A T C G C A G T G T A C C G T A G T A C
A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:YTAYAGTCAC-----
-----GTCACATGAY
 A G C T A G C T G T C A A G T C C G T A A T C G C A G T G T A C C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:YTAYAGTCAC
--CCTGTCAA
 A G C T A G C T G T C A A G T C C G T A A T C G C A G T G T A C C G T A G T A C
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:YTAYAGTCAC
--BCAGACWA
 A G C T A G C T G T C A A G T C C G T A A T C G C A G T G T A C C G T A G T A C
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

USF2/MA0526.1/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:YTAYAGTCAC-----
----GGTCACATGAC
 A G C T A G C T G T C A A G T C C G T A A T C G C A G T G T A C C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:YTAYAGTCAC---------
-----GTCACGCTCNCTGA
 A G C T A G C T G T C A A G T C C G T A A T C G C A G T G T A C C G T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

USF1/MA0093.2/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:YTAYAGTCAC-----
----GGTCACGTGGC
 A G C T A G C T G T C A A G T C C G T A A T C G C A G T G T A C C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C