Information for 3-ATGGCAATCG (Motif 23)

C G T A A C G T A T C G A C T G A G T C G T C A C G T A A G C T T G A C A C T G
Reverse Opposite:
A G T C A C T G C T G A A C G T A C G T A C T G A G T C A T G C C G T A A C G T
p-value:1e-9
log p-value:-2.077e+01
Information Content per bp:1.883
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif14.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.0 +/- 15.3bp
Average Position of motif in Background54.8 +/- 22.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----ATGGCAATCG
TTGCCATGGCAACC-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A T C G A C T G A G T C G T C A C G T A A G C T T G A C A C T G
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:2
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------ATGGCAATCG
GTTGCCATGGCAACCG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A T C G A C T G A G T C G T C A C G T A A G C T T G A C A C T G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----ATGGCAATCG
TTGCCATGGCAACN-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A T C G A C T G A G T C G T C A C G T A A G C T T G A C A C T G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ATGGCAATCG-
TACCATAGCAACGGT
 A C G T A C G T A C G T A C G T C G T A A C G T A T C G A C T G A G T C G T C A C G T A A G C T T G A C A C T G A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCAATCG
CTTGGCAA---
 A C G T C G T A A C G T A T C G A C T G A G T C G T C A C G T A A G C T T G A C A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATGGCAATCG
TAATGGCGGNC-
 A C G T A C G T C G T A A C G T A T C G A C T G A G T C G T C A C G T A A G C T T G A C A C T G
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCAATCG
NTTGGCANN--
 A C G T C G T A A C G T A T C G A C T G A G T C G T C A C G T A A G C T T G A C A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ATGGCAATCG
SCCTAGCAACAG
 A C G T A C G T C G T A A C G T A T C G A C T G A G T C G T C A C G T A A G C T T G A C A C T G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

NFAT5/MA0606.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCAATCG
NATGGAAAAN-
 A C G T C G T A A C G T A T C G A C T G A G T C G T C A C G T A A G C T T G A C A C T G
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------ATGGCAATCG
GTTGCCATGGCAAC--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A T C G A C T G A G T C G T C A C G T A A G C T T G A C A C T G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T