Information for 6-CATTGGTTARGGT (Motif 20)

G T A C C G T A A G C T A C G T A C T G A C T G A C G T A C G T C G T A C T G A C T A G A C T G A G C T
Reverse Opposite:
C T G A A G T C A G T C G A C T C G A T G T C A G T C A A G T C A G T C T G C A C T G A C G A T A C T G
p-value:1e-9
log p-value:-2.244e+01
Information Content per bp:1.736
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif28.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets43.2 +/- 21.1bp
Average Position of motif in Background45.9 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CATTGGTTARGGT
NNAATTAGTCACGGT
 A C G T A C G T G T A C C G T A A G C T A C G T A C T G A C T G A C G T A C G T C G T A C T G A C T A G A C T G A G C T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CATTGGTTARGGT
TGATTGGCTANN--
 A C G T G T A C C G T A A G C T A C G T A C T G A C T G A C G T A C G T C G T A C T G A C T A G A C T G A G C T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CATTGGTTARGGT
CTGATTGGTCNATTT
 A C G T A C G T G T A C C G T A A G C T A C G T A C T G A C T G A C G T A C G T C G T A C T G A C T A G A C T G A G C T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CATTGGTTARGGT
CCGATTGGCT-----
 A C G T A C G T G T A C C G T A A G C T A C G T A C T G A C T G A C G T A C G T C G T A C T G A C T A G A C T G A G C T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CATTGGTTARGGT--
---AGGTCAAGGTCA
 G T A C C G T A A G C T A C G T A C T G A C T G A C G T A C G T C G T A C T G A C T A G A C T G A G C T A C G T A C G T
A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CATTGGTTARGGT--
---AGGTCAAGGTCA
 G T A C C G T A A G C T A C G T A C T G A C T G A C G T A C G T C G T A C T G A C T A G A C T G A G C T A C G T A C G T
A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

HMBOX1/MA0895.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CATTGGTTARGGT
-ACTAGTTAAC--
 G T A C C G T A A G C T A C G T A C T G A C T G A C G T A C G T C G T A C T G A C T A G A C T G A G C T
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CATTGGTTARGGT-
GAAAACTAGTTAACATC
 A C G T A C G T A C G T G T A C C G T A A G C T A C G T A C T G A C T G A C G T A C G T C G T A C T G A C T A G A C T G A G C T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CATTGGTTARGGT
-ATTGTTTAN---
 G T A C C G T A A G C T A C G T A C T G A C T G A C G T A C G T C G T A C T G A C T A G A C T G A G C T
A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C A C G T A C G T A C G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CATTGGTTARGGT
TAATTGATTA----
 A C G T G T A C C G T A A G C T A C G T A C T G A C T G A C G T A C G T C G T A C T G A C T A G A C T G A G C T
C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A A C G T A C G T A C G T A C G T