Information for 9-CCGADAGGAGGCA (Motif 2)

A G T C G T A C A C T G G T C A C A G T C G T A A C T G A C T G C G T A C T A G A C T G G T A C C T G A
Reverse Opposite:
A G C T A C T G A G T C A G T C C G A T A G T C A G T C A C G T G C T A A C G T G T A C A C T G C T A G
p-value:1e-12
log p-value:-2.863e+01
Information Content per bp:1.819
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.6 +/- 22.4bp
Average Position of motif in Background42.8 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCGADAGGAGGCA------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C G T A C A C T G G T C A C A G T C G T A A C T G A C T G C G T A C T A G A C T G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCGADAGGAGGCA---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C G T A C A C T G G T C A C A G T C G T A A C T G A C T G C G T A C T A G A C T G G T A C C T G A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CCGADAGGAGGCA----
-----AGGAAACAGCTG
 A G T C G T A C A C T G G T C A C A G T C G T A A C T G A C T G C G T A C T A G A C T G G T A C C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCGADAGGAGGCA----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C G T A C A C T G G T C A C A G T C G T A A C T G A C T G C G T A C T A G A C T G G T A C C T G A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCGADAGGAGGCA
--AACAGGAAGT-
 A G T C G T A C A C T G G T C A C A G T C G T A A C T G A C T G C G T A C T A G A C T G G T A C C T G A
A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCGADAGGAGGCA----
NTNNNAGGAGTCTCNTN
 A G T C G T A C A C T G G T C A C A G T C G T A A C T G A C T G C G T A C T A G A C T G G T A C C T G A A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

PKNOX2/MA0783.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCGADAGGAGGCA
-TGACAGGTGTCA
 A G T C G T A C A C T G G T C A C A G T C G T A A C T G A C T G C G T A C T A G A C T G G T A C C T G A
A C G T C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCGADAGGAGGCA
---ACAGGAAGTG
 A G T C G T A C A C T G G T C A C A G T C G T A A C T G A C T G C G T A C T A G A C T G G T A C C T G A
A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCGADAGGAGGCA-
--NDCAGGAARTNN
 A G T C G T A C A C T G G T C A C A G T C G T A A C T G A C T G C G T A C T A G A C T G G T A C C T G A A C G T
A C G T A C G T T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G

PKNOX1/MA0782.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCGADAGGAGGCA
-TGACAGGTGTCA
 A G T C G T A C A C T G G T C A C A G T C G T A A C T G A C T G C G T A C T A G A C T G G T A C C T G A
A C G T G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A