Information for 1-CCCCTCGTGGTCACAG (Motif 3)

A G T C G T A C A G T C A G T C A C G T G T A C C T A G A C G T A C T G A C T G A G C T A G T C C G T A A G T C C G T A A T C G
Reverse Opposite:
A T G C G C A T A C T G C G A T C T A G C T G A A G T C A G T C C G T A A G T C A C T G C G T A A C T G C T A G A C T G A C T G
p-value:1e-15
log p-value:-3.582e+01
Information Content per bp:1.805
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.1 +/- 23.9bp
Average Position of motif in Background73.5 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------CCCCTCGTGGTCACAG
TAGCGCCCCCTGGTGGCCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G T C A G T C A C G T G T A C C T A G A C G T A C T G A C T G A G C T A G T C C G T A A G T C C G T A A T C G
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------CCCCTCGTGGTCACAG
ANAGTGCCACCTGGTGGCCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G T C A G T C A C G T G T A C C T A G A C G T A C T G A C T G A G C T A G T C C G T A A G T C C G T A A T C G
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.65
Offset:-9
Orientation:forward strand
Alignment:---------CCCCTCGTGGTCACAG
CNNBRGCGCCCCCTGSTGGC-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G T C A G T C A C G T G T A C C T A G A C G T A C T G A C T G A G C T A G T C C G T A A G T C C G T A A T C G
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T A C G T A C G T A C G T

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCCCTCGTGGTCACAG
--CCACGTGGNN----
 A G T C G T A C A G T C A G T C A C G T G T A C C T A G A C G T A C T G A C T G A G C T A G T C C G T A A G T C C G T A A T C G
A C G T A C G T T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C A C G T A C G T A C G T A C G T

PB0043.1_Max_1/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCCCTCGTGGTCACAG
CCNNANCACGTGGTCN---
 A C G T A C G T A C G T A G T C G T A C A G T C A G T C A C G T G T A C C T A G A C G T A C T G A C T G A G C T A G T C C G T A A G T C C G T A A T C G
G T A C G T A C A G T C T A C G T G C A T A G C G T A C C T G A A G T C T C A G G A C T A C T G A T C G A C G T G T A C G T C A A C G T A C G T A C G T

MAX::MYC/MA0059.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCCCTCGTGGTCACAG
-ACCACGTGCTC----
 A G T C G T A C A G T C A G T C A C G T G T A C C T A G A C G T A C T G A C T G A G C T A G T C C G T A A G T C C G T A A T C G
A C G T C T G A A G T C A G T C C T G A A G T C C T A G A C G T A C T G A T C G A G C T G A T C A C G T A C G T A C G T A C G T

Mycn/MA0104.3/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CCCCTCGTGGTCACAG
---CACGTGGC-----
 A G T C G T A C A G T C A G T C A C G T G T A C C T A G A C G T A C T G A C T G A G C T A G T C C G T A A G T C C G T A A T C G
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C A C G T A C G T A C G T A C G T A C G T

Mitf/MA0620.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCCCTCGTGGTCACAG
--NCACGTGACN----
 A G T C G T A C A G T C A G T C A C G T G T A C C T A G A C G T A C T G A C T G A G C T A G T C C G T A A G T C C G T A A T C G
A C G T A C G T A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C A C G T A C G T A C G T A C G T

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCCCTCGTGGTCACAG
-ACCACGTGGTNN---
 A G T C G T A C A G T C A G T C A C G T G T A C C T A G A C G T A C T G A C T G A G C T A G T C C G T A A G T C C G T A A T C G
A C G T T C G A T G A C A G T C C G T A A G T C C T A G A C G T A C T G A C T G A G C T A G T C G C A T A C G T A C G T A C G T

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCCCTCGTGGTCACAG
--CCACGTGGNN----
 A G T C G T A C A G T C A G T C A C G T G T A C C T A G A C G T A C T G A C T G A G C T A G T C C G T A A G T C C G T A A T C G
A C G T A C G T T A G C A G T C C G T A A G T C C T A G A G C T A C T G A T C G A G T C A G T C A C G T A C G T A C G T A C G T