Information for 4-TGCTGGAGAACARWAG (Motif 9)

A G C T C T A G A G T C C G A T C T A G A T C G G T C A C T A G G T C A G T C A A G T C G T C A T C G A C G A T C T G A C T A G
Reverse Opposite:
A G T C A G C T C G T A A G C T A C G T A C T G A C G T A C G T A G T C C A G T A T G C A G T C C G T A C T A G G A T C C T G A
p-value:1e-12
log p-value:-2.860e+01
Information Content per bp:1.710
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.4 +/- 22.3bp
Average Position of motif in Background30.8 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:TGCTGGAGAACARWAG-
-------GAACAATGGN
 A G C T C T A G A G T C C G A T C T A G A T C G G T C A C T A G G T C A G T C A A G T C G T C A T C G A C G A T C T G A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0065.1_Sox15_1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TGCTGGAGAACARWAG----
---TAGTGAACAATAGATTT
 A G C T C T A G A G T C C G A T C T A G A T C G G T C A C T A G G T C A G T C A A G T C G T C A T C G A C G A T C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TGCTGGAGAACARWAG----
---ATAAGAACAAAGGACTA
 A G C T C T A G A G T C C G A T C T A G A T C G G T C A C T A G G T C A G T C A A G T C G T C A T C G A C G A T C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGCTGGAGAACARWAG----
---AGAAGAACAAAGGACTA
 A G C T C T A G A G T C C G A T C T A G A T C G G T C A C T A G G T C A G T C A A G T C G T C A T C G A C G A T C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:TGCTGGAGAACARWAG
-------GAACAATGG
 A G C T C T A G A G T C C G A T C T A G A T C G G T C A C T A G G T C A G T C A A G T C G T C A T C G A C G A T C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

PB0073.1_Sox7_1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGCTGGAGAACARWAG-------
-AATAAAGAACAATAGAATTTCA
 A G C T C T A G A G T C C G A T C T A G A T C G G T C A C T A G G T C A G T C A A G T C G T C A T C G A C G A T C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:TGCTGGAGAACARWAG
------AAAACAAAGG
 A G C T C T A G A G T C C G A T C T A G A T C G G T C A C T A G G T C A G T C A A G T C G T C A T C G A C G A T C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.58
Offset:7
Orientation:forward strand
Alignment:TGCTGGAGAACARWAG-
-------RAACAATGGN
 A G C T C T A G A G T C C G A T C T A G A T C G G T C A C T A G G T C A G T C A A G T C G T C A T C G A C G A T C T G A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:TGCTGGAGAACARWAG
------VRAACAATGG
 A G C T C T A G A G T C C G A T C T A G A T C G G T C A C T A G G T C A G T C A A G T C G T C A T C G A C G A T C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PB0141.1_Isgf3g_2/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TGCTGGAGAACARWAG--
----GCAAAACATTACTA
 A G C T C T A G A G T C C G A T C T A G A T C G G T C A C T A G G T C A G T C A A G T C G T C A T C G A C G A T C T G A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A