Information for 4-CTAATTAGBY (Motif 4)

A G T C A G C T G T C A G T C A C G A T A C G T C G T A C T A G A C G T A G C T
Reverse Opposite:
T C G A T C G A G A T C A C G T T G C A C G T A C A G T C A G T C T G A T C A G
p-value:1e-16
log p-value:-3.710e+01
Information Content per bp:1.643
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif9.36%
Number of Background Sequences with motif1591.6
Percentage of Background Sequences with motif3.36%
Average Position of motif in Targets48.4 +/- 30.4bp
Average Position of motif in Background48.9 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LHX6/MA0658.1/Jaspar

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGBY
NCTAATTAGT-
 A C G T A G T C A G C T G T C A G T C A C G A T A C G T C G T A C T A G A C G T A G C T
T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGBY
NCTAATTA---
 A C G T A G T C A G C T G T C A G T C A C G A T A C G T C G T A C T A G A C G T A G C T
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-CTAATTAGBY
ACTAATTAAC-
 A C G T A G T C A G C T G T C A G T C A C G A T A C G T C G T A C T A G A C G T A G C T
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T

EMX2/MA0886.1/Jaspar

Match Rank:4
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGBY
NCTAATTANN-
 A C G T A G T C A G C T G T C A G T C A C G A T A C G T C G T A C T A G A C G T A G C T
T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C A C G T

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:CTAATTAGBY
YTAATTAVHT
 A G T C A G C T G T C A G T C A C G A T A C G T C G T A C T A G A C G T A G C T
A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:6
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CTAATTAGBY
NNYTAATTAR--
 A C G T A C G T A G T C A G C T G T C A G T C A C G A T A C G T C G T A C T A G A C G T A G C T
C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G A C G T A C G T

PH0031.1_Evx1/Jaspar

Match Rank:7
Score:0.91
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTAGBY--
NNNCACTAATTAGTNNT
 A C G T A C G T A C G T A C G T A C G T A G T C A G C T G T C A G T C A C G A T A C G T C G T A C T A G A C G T A G C T A C G T A C G T
A C T G G C A T A T G C T A G C T C G A A T G C G A C T G T C A G T C A A C G T A C G T C T G A T A C G A G C T C A G T A G T C C G A T

NOTO/MA0710.1/Jaspar

Match Rank:8
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-CTAATTAGBY
GCTAATTAGC-
 A C G T A G T C A G C T G T C A G T C A C G A T A C G T C G T A C T A G A C G T A G C T
T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C A C G T

POU6F1/MA0628.1/Jaspar

Match Rank:9
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-CTAATTAGBY
ATTAATTAAT-
 A C G T A G T C A G C T G T C A G T C A C G A T A C G T C G T A C T A G A C G T A G C T
T C G A G A C T G C A T G T C A G T C A A C G T C A G T C G T A C T G A A G C T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:10
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CTAATTAGBY
CTAATTAG--
 A G T C A G C T G T C A G T C A C G A T A C G T C G T A C T A G A C G T A G C T
A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T