Information for 11-TTTAAAGGGC (Motif 23)

A G C T A C G T C A G T T G C A C G T A C T G A C A T G C T A G C A T G A G T C
Reverse Opposite:
T C A G G T A C A G T C G T A C G A C T C G A T A C G T G T C A T G C A T C G A
p-value:1e-8
log p-value:-1.951e+01
Information Content per bp:1.680
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.07%
Number of Background Sequences with motif892.8
Percentage of Background Sequences with motif1.88%
Average Position of motif in Targets51.1 +/- 26.9bp
Average Position of motif in Background48.2 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTTAAAGGGC
TTTAATTGCN
 A G C T A C G T C A G T T G C A C G T A C T G A C A T G C T A G C A T G A G T C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAAGGGC
NATTCAAAT---
 A C G T A C G T A G C T A C G T C A G T T G C A C G T A C T G A C A T G C T A G C A T G A G T C
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTTAAAGGGC
GNCTATAAAAGG-
 A C G T A C G T A C G T A G C T A C G T C A G T T G C A C G T A C T G A C A T G C T A G C A T G A G T C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTTAAAGGGC-
-NTCAAGGTCA
 A G C T A C G T C A G T T G C A C G T A C T G A C A T G C T A G C A T G A G T C A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTTAAAGGGC
ACATCAAAGG--
 A C G T A C G T A G C T A C G T C A G T T G C A C G T A C T G A C A T G C T A G C A T G A G T C
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTTAAAGGGC
ACWTCAAAGG--
 A C G T A C G T A G C T A C G T C A G T T G C A C G T A C T G A C A T G C T A G C A T G A G T C
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTTAAAGGGC-
ANGNAAAGGTCA
 A C G T A G C T A C G T C A G T T G C A C G T A C T G A C A T G C T A G C A T G A G T C A C G T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTTAAAGGGC-----
TCTCAAAGGTCACGAG
 A C G T A G C T A C G T C A G T T G C A C G T A C T G A C A T G C T A G C A T G A G T C A C G T A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TTTAAAGGGC
CGGTTTCAAA----
 A C G T A C G T A C G T A C G T A G C T A C G T C A G T T G C A C G T A C T G A C A T G C T A G C A T G A G T C
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTTAAAGGGC-----
TCTCAAAGGTCACCTG
 A C G T A G C T A C G T C A G T T G C A C G T A C T G A C A T G C T A G C A T G A G T C A C G T A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G