Information for 9-GCTAATCCCC (Motif 15)

C T A G A T G C C A G T T C G A G C T A C G A T G A T C T G A C G T A C G T A C
Reverse Opposite:
C A T G C A T G A C T G C T A G G C T A C G A T A G C T G T C A A T C G G A T C
p-value:1e-11
log p-value:-2.535e+01
Information Content per bp:1.667
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif5.29%
Number of Background Sequences with motif797.1
Percentage of Background Sequences with motif1.68%
Average Position of motif in Targets47.8 +/- 27.5bp
Average Position of motif in Background50.6 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATCCCC--
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T C T A G A T G C C A G T T C G A G C T A C G A T G A T C T G A C G T A C G T A C A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--GCTAATCCCC----
AGGCTAATCCCCAANG
 A C G T A C G T C T A G A T G C C A G T T C G A G C T A C G A T G A T C T G A C G T A C G T A C A C G T A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

GSC/MA0648.1/Jaspar

Match Rank:3
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GCTAATCCCC
GCTAATCCCC
 C T A G A T G C C A G T T C G A G C T A C G A T G A T C T G A C G T A C G T A C
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GCTAATCCCC
GCTAATCC--
 C T A G A T G C C A G T T C G A G C T A C G A T G A T C T G A C G T A C G T A C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:5
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:GCTAATCCCC--
-CTAATCCTCTT
 C T A G A T G C C A G T T C G A G C T A C G A T G A T C T G A C G T A C G T A C A C G T A C G T
A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GCTAATCCCC
CTTAATCCC-
 C T A G A T G C C A G T T C G A G C T A C G A T G A T C T G A C G T A C G T A C
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GCTAATCCCC
NYTAATCCYB
 C T A G A T G C C A G T T C G A G C T A C G A T G A T C T G A C G T A C G T A C
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GCTAATCCCC
CCTAATCCGC
 C T A G A T G C C A G T T C G A G C T A C G A T G A T C T G A C G T A C G T A C
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----GCTAATCCCC---
AATCGTTAATCCCTTTA
 A C G T A C G T A C G T A C G T C T A G A T G C C A G T T C G A G C T A C G A T G A T C T G A C G T A C G T A C A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

PH0123.1_Obox3/Jaspar

Match Rank:10
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---GCTAATCCCC----
ATAGTTAATCCCCCNNA
 A C G T A C G T A C G T C T A G A T G C C A G T T C G A G C T A C G A T G A T C T G A C G T A C G T A C A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A