Information for 4-GGAAAGNCCTATN (Motif 9)

A C T G A T C G C G T A C G T A C G T A A T C G A C T G A T G C G T A C A G C T T C G A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T C T G A A C T G A T C G A G T C A T G C A C G T A C G T A C G T A T G C A G T C
p-value:1e-6
log p-value:-1.563e+01
Information Content per bp:1.757
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.93%
Number of Background Sequences with motif105.8
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets39.6 +/- 27.5bp
Average Position of motif in Background52.3 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REL/MA0101.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGAAAGNCCTATN
GGAAANCCCC---
 A C T G A T C G C G T A C G T A C G T A A T C G A C T G A T G C G T A C A G C T T C G A A C G T C G T A
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGAAAGNCCTATN
GGAAATTCCC---
 A C T G A T C G C G T A C G T A C G T A A T C G A C T G A T G C G T A C A G C T T C G A A C G T C G T A
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GGAAAGNCCTATN
GGAAATCCCC---
 A C T G A T C G C G T A C G T A C G T A A T C G A C T G A T G C G T A C A G C T T C G A A C G T C G T A
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGAAAGNCCTATN
GGAAATTCCC---
 A C T G A T C G C G T A C G T A C G T A A T C G A C T G A T G C G T A C A G C T T C G A A C G T C G T A
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGAAAGNCCTATN
GGGAAATCCCCN--
 A C G T A C T G A T C G C G T A C G T A C G T A A T C G A C T G A T G C G T A C A G C T T C G A A C G T C G T A
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GGAAAGNCCTATN
NNTGGAAANN------
 A C G T A C G T A C G T A C T G A T C G C G T A C G T A C G T A A T C G A C T G A T G C G T A C A G C T T C G A A C G T C G T A
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GGAAAGNCCTATN
AATGGAAAAT------
 A C G T A C G T A C G T A C T G A T C G C G T A C G T A C G T A A T C G A C T G A T G C G T A C A G C T T C G A A C G T C G T A
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGAAAGNCCTATN
TGGAAAA-------
 A C G T A C T G A T C G C G T A C G T A C G T A A T C G A C T G A T G C G T A C A G C T T C G A A C G T C G T A
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGAAAGNCCTATN-
GGCAAAAGTCCAATAA
 A C G T A C G T A C T G A T C G C G T A C G T A C G T A A T C G A C T G A T G C G T A C A G C T T C G A A C G T C G T A A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GGAAAGNCCTATN
AATGGAAAAT------
 A C G T A C G T A C G T A C T G A T C G C G T A C G T A C G T A A T C G A C T G A T G C G T A C A G C T T C G A A C G T C G T A
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T A C G T A C G T A C G T A C G T