Information for 1-TVTHACACCAGVGCCA (Motif 2)

A G C T T C G A C G A T G A C T C G T A A G T C G T C A A G T C A G T C C T G A C T A G T A G C A C T G G T A C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C A T C G A G T C A G C T A C T G A C T G A C G T C T A G A C G T C G T A C G T A A C G T C T G A
p-value:1e-11
log p-value:-2.564e+01
Information Content per bp:1.789
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.25%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.5 +/- 25.8bp
Average Position of motif in Background71.9 +/- 8.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.59
Offset:8
Orientation:forward strand
Alignment:TVTHACACCAGVGCCA--
--------CAAGGHCANV
 A G C T T C G A C G A T G A C T C G T A A G T C G T C A A G T C A G T C C T G A C T A G T A G C A C T G G T A C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TVTHACACCAGVGCCA
-ATCACCCCAT-----
 A G C T T C G A C G A T G A C T C G T A A G T C G T C A A G T C A G T C C T G A C T A G T A G C A C T G G T A C A G T C C G T A
A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TVTHACACCAGVGCCA
------NTCAAGGTCA
 A G C T T C G A C G A T G A C T C G T A A G T C G T C A A G T C A G T C C T G A C T A G T A G C A C T G G T A C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

SREBF2/MA0596.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TVTHACACCAGVGCCA
-ATCACCCCAT-----
 A G C T T C G A C G A T G A C T C G T A A G T C G T C A A G T C A G T C C T G A C T A G T A G C A C T G G T A C A G T C C G T A
A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.56
Offset:6
Orientation:forward strand
Alignment:TVTHACACCAGVGCCA
------BTCAAGGTCA
 A G C T T C G A C G A T G A C T C G T A A G T C G T C A A G T C A G T C C T G A C T A G T A G C A C T G G T A C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.56
Offset:9
Orientation:forward strand
Alignment:TVTHACACCAGVGCCA--
---------CGTGCCAAG
 A G C T T C G A C G A T G A C T C G T A A G T C G T C A A G T C A G T C C T G A C T A G T A G C A C T G G T A C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.56
Offset:11
Orientation:reverse strand
Alignment:TVTHACACCAGVGCCA-
-----------TGCCAA
 A G C T T C G A C G A T G A C T C G T A A G T C G T C A A G T C A G T C C T G A C T A G T A G C A C T G G T A C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TVTHACACCAGVGCCA--
---AAGTTCAAGGTCAGC
 A G C T T C G A C G A T G A C T C G T A A G T C G T C A A G T C A G T C C T G A C T A G T A G C A C T G G T A C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

SREBF1/MA0595.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TVTHACACCAGVGCCA
-ATCACCCCAC-----
 A G C T T C G A C G A T G A C T C G T A A G T C G T C A A G T C A G T C C T G A C T A G T A G C A C T G G T A C A G T C C G T A
A C G T T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C A C G T A C G T A C G T A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TVTHACACCAGVGCCA
CNGTCACGCCAC-----
 A C G T A G C T T C G A C G A T G A C T C G T A A G T C G T C A A G T C A G T C C T G A C T A G T A G C A C T G G T A C A G T C C G T A
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C A C G T A C G T A C G T A C G T A C G T