Information for 3-YTGTGTTGCT (Motif 9)

A G C T A C G T A T C G A C G T T A C G G A C T A C G T T C A G G A T C C G A T
Reverse Opposite:
G C T A C T A G A G T C G T C A C T G A A T G C T G C A T A G C G T C A C T G A
p-value:1e-3
log p-value:-8.158e+00
Information Content per bp:1.633
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif9.68%
Number of Background Sequences with motif1436.9
Percentage of Background Sequences with motif2.91%
Average Position of motif in Targets38.5 +/- 25.1bp
Average Position of motif in Background49.5 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:YTGTGTTGCT------
-NCCGTTGCTANGNGN
 A G C T A C G T A T C G A C G T T A C G G A C T A C G T T C A G G A T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:YTGTGTTGCT----
--CTGTTGCTAGGS
 A G C T A C G T A T C G A C G T T A C G G A C T A C G T T C A G G A T C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---YTGTGTTGCT----------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A G C T A C G T A T C G A C G T T A C G G A C T A C G T T C A G G A T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:YTGTGTTGCT------
-NNCGTTGCTATGGNN
 A G C T A C G T A T C G A C G T T A C G G A C T A C G T T C A G G A T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:5
Score:0.61
Offset:-8
Orientation:forward strand
Alignment:--------YTGTGTTGCT--
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A T C G A C G T T A C G G A C T A C G T T C A G G A T C C G A T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:YTGTGTTGCT-
------NGCTN
 A G C T A C G T A T C G A C G T T A C G G A C T A C G T T C A G G A T C C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:YTGTGTTGCT--------
---KGTTGCTAGGMAACA
 A G C T A C G T A T C G A C G T T A C G G A C T A C G T T C A G G A T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:YTGTGTTGCT------
-TNTCCTGCTGTGNNG
 A G C T A C G T A T C G A C G T T A C G G A C T A C G T T C A G G A T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--YTGTGTTGCT--------
GNCTGTASTRNTGBCTCHTT
 A C G T A C G T A G C T A C G T A T C G A C G T T A C G G A C T A C G T T C A G G A T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G G A C T G A T C A C G T A T C G A G C T C T G A A T C G C G A T C T A G G A T C G A C T C A T G A T C G G T A C G A C T A G T C G C A T A G C T C G A T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:YTGTGTTGCT-
TTTTATGGCTN
 A G C T A C G T A T C G A C G T T A C G G A C T A C G T T C A G G A T C C G A T A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T