Information for 10-GAGCCAATAA (Motif 23)

A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T T G C A C T G A
Reverse Opposite:
A G C T A C G T T G C A A C G T A C G T A C T G A C T G A G T C A C G T A T G C
p-value:1e-7
log p-value:-1.639e+01
Information Content per bp:1.874
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif92.2
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets42.0 +/- 17.2bp
Average Position of motif in Background53.8 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAATAA
ACTAGCCAATCA
 A C G T A C G T A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T T G C A C T G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GAGCCAATAA-
-AGCCAATCGG
 A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T T G C A C T G A A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----GAGCCAATAA-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T T G C A C T G A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GAGCCAATAA
CGTGCCAAG--
 A C G T A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T T G C A C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GAGCCAATAA
-TGCCAA---
 A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T T G C A C T G A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GAGCCAATAA
GGTGCCAAGT-
 A C G T A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T T G C A C T G A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCAATAA-------
TGGACCAATCAGCACTCT
 A C G T A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T T G C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GAGCCAATAA---
---CCAATAAAAC
 A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T T G C A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAGCCAATAA------
CGACCCAATCAACGGTG
 A C G T A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T T G C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GAGCCAATAA------
AACCCAATAAAATTCG
 A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T T G C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G