Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 872)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47429)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-46	-1.073e+02	0.0000	60.0	6.88%	232.4	0.49%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-38	-8.839e+01	0.0000	113.0	12.96%	1380.6	2.93%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-34	-7.974e+01	0.0000	116.0	13.30%	1599.5	3.39%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-34	-7.957e+01	0.0000	93.0	10.67%	1033.4	2.19%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-34	-7.840e+01	0.0000	97.0	11.12%	1143.1	2.42%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-33	-7.786e+01	0.0000	59.0	6.77%	381.4	0.81%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-32	-7.579e+01	0.0000	99.0	11.35%	1231.8	2.61%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-31	-7.230e+01	0.0000	105.0	12.04%	1442.4	3.06%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-29	-6.783e+01	0.0000	70.0	8.03%	677.3	1.44%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-28	-6.672e+01	0.0000	60.0	6.88%	491.4	1.04%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-21	-5.063e+01	0.0000	67.0	7.68%	843.6	1.79%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-20	-4.769e+01	0.0000	86.0	9.86%	1410.6	2.99%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-20	-4.690e+01	0.0000	146.0	16.74%	3411.6	7.23%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-19	-4.408e+01	0.0000	171.0	19.61%	4466.3	9.47%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-19	-4.375e+01	0.0000	99.0	11.35%	1907.5	4.04%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-18	-4.256e+01	0.0000	63.0	7.22%	880.9	1.87%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-18	-4.224e+01	0.0000	107.0	12.27%	2214.3	4.69%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-17	-4.114e+01	0.0000	80.0	9.17%	1388.1	2.94%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-16	-3.828e+01	0.0000	127.0	14.56%	3056.9	6.48%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-16	-3.807e+01	0.0000	159.0	18.23%	4279.8	9.07%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-15	-3.635e+01	0.0000	104.0	11.93%	2309.2	4.89%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-15	-3.621e+01	0.0000	71.0	8.14%	1242.0	2.63%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-15	-3.614e+01	0.0000	121.0	13.88%	2923.0	6.19%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-15	-3.517e+01	0.0000	41.0	4.70%	460.2	0.98%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-14	-3.299e+01	0.0000	228.0	26.15%	7466.8	15.82%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-14	-3.281e+01	0.0000	97.0	11.12%	2193.7	4.65%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-13	-3.016e+01	0.0000	168.0	19.27%	5069.1	10.74%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-12	-2.833e+01	0.0000	91.0	10.44%	2151.1	4.56%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-12	-2.770e+01	0.0000	124.0	14.22%	3422.3	7.25%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-11	-2.708e+01	0.0000	59.0	6.77%	1115.4	2.36%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-11	-2.619e+01	0.0000	359.0	41.17%	14248.2	30.20%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-11	-2.598e+01	0.0000	80.0	9.17%	1852.7	3.93%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-11	-2.552e+01	0.0000	78.0	8.94%	1799.0	3.81%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-10	-2.485e+01	0.0000	255.0	29.24%	9335.1	19.78%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-10	-2.482e+01	0.0000	102.0	11.70%	2714.0	5.75%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-10	-2.456e+01	0.0000	154.0	17.66%	4833.4	10.24%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-10	-2.420e+01	0.0000	30.0	3.44%	365.4	0.77%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-10	-2.412e+01	0.0000	103.0	11.81%	2786.8	5.91%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-10	-2.400e+01	0.0000	51.0	5.85%	952.8	2.02%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-10	-2.322e+01	0.0000	308.0	35.32%	12031.3	25.50%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-9	-2.142e+01	0.0000	18.0	2.06%	144.2	0.31%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-8	-1.917e+01	0.0000	50.0	5.73%	1067.7	2.26%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-8	-1.917e+01	0.0000	47.0	5.39%	968.9	2.05%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-8	-1.905e+01	0.0000	90.0	10.32%	2544.1	5.39%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-7	-1.731e+01	0.0000	131.0	15.02%	4361.6	9.24%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-7	-1.705e+01	0.0000	13.0	1.49%	94.2	0.20%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-7	-1.702e+01	0.0000	48.0	5.50%	1075.9	2.28%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-7	-1.661e+01	0.0000	88.0	10.09%	2604.0	5.52%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-6	-1.546e+01	0.0000	219.0	25.11%	8565.2	18.15%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-6	-1.494e+01	0.0000	15.0	1.72%	154.9	0.33%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-6	-1.481e+01	0.0000	76.0	8.72%	2229.8	4.73%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-6	-1.469e+01	0.0000	71.0	8.14%	2037.0	4.32%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-5	-1.372e+01	0.0000	28.0	3.21%	526.8	1.12%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-5	-1.369e+01	0.0000	13.0	1.49%	127.5	0.27%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-5	-1.234e+01	0.0000	51.0	5.85%	1387.0	2.94%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-5	-1.228e+01	0.0000	51.0	5.85%	1389.9	2.95%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-5	-1.200e+01	0.0000	51.0	5.85%	1404.8	2.98%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-5	-1.198e+01	0.0000	19.0	2.18%	303.5	0.64%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-5	-1.159e+01	0.0001	40.0	4.59%	1010.1	2.14%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-4	-1.132e+01	0.0001	82.0	9.40%	2714.8	5.75%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-4	-1.127e+01	0.0001	100.0	11.47%	3500.8	7.42%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-4	-1.094e+01	0.0001	42.0	4.82%	1115.9	2.36%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-4	-1.057e+01	0.0001	17.0	1.95%	278.2	0.59%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-1.040e+01	0.0002	27.0	3.10%	598.9	1.27%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-4	-1.020e+01	0.0002	52.0	5.96%	1545.1	3.27%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-4	-9.974e+00	0.0003	185.0	21.22%	7605.9	16.12%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-4	-9.922e+00	0.0003	125.0	14.33%	4766.0	10.10%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-4	-9.869e+00	0.0003	81.0	9.29%	2788.5	5.91%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-4	-9.667e+00	0.0003	114.0	13.07%	4286.5	9.08%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-4	-9.656e+00	0.0003	7.0	0.80%	52.8	0.11%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-4	-9.400e+00	0.0004	44.0	5.05%	1274.8	2.70%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-3	-9.013e+00	0.0006	43.0	4.93%	1257.8	2.67%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-3	-8.096e+00	0.0015	42.0	4.82%	1273.6	2.70%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-3	-8.025e+00	0.0016	97.0	11.12%	3684.0	7.81%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-8.022e+00	0.0016	23.0	2.64%	549.5	1.16%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-3	-7.952e+00	0.0017	103.0	11.81%	3969.6	8.41%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-7.750e+00	0.0020	75.0	8.60%	2715.6	5.76%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-7.620e+00	0.0023	42.0	4.82%	1304.8	2.77%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-3	-7.553e+00	0.0024	20.0	2.29%	462.3	0.98%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-3	-7.198e+00	0.0034	30.0	3.44%	849.9	1.80%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-3	-7.126e+00	0.0036	90.0	10.32%	3463.0	7.34%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-7.043e+00	0.0039	20.0	2.29%	482.9	1.02%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-6.787e+00	0.0049	13.0	1.49%	254.1	0.54%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-6.755e+00	0.0051	52.0	5.96%	1792.6	3.80%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-6.683e+00	0.0054	32.0	3.67%	958.8	2.03%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-6.658e+00	0.0054	43.0	4.93%	1414.1	3.00%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-2	-6.575e+00	0.0058	42.0	4.82%	1378.1	2.92%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-6.562e+00	0.0058	54.0	6.19%	1896.6	4.02%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-2	-6.366e+00	0.0070	42.0	4.82%	1394.4	2.96%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-6.280e+00	0.0076	61.0	7.00%	2233.5	4.73%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-6.057e+00	0.0094	23.0	2.64%	639.7	1.36%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-5.837e+00	0.0115	53.0	6.08%	1919.9	4.07%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-2	-5.772e+00	0.0122	13.0	1.49%	286.1	0.61%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.681e+00	0.0132	18.0	2.06%	468.3	0.99%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-5.431e+00	0.0168	206.0	23.62%	9415.2	19.95%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-5.395e+00	0.0172	45.0	5.16%	1606.7	3.41%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-5.355e+00	0.0177	20.0	2.29%	560.0	1.19%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.242e+00	0.0196	20.0	2.29%	566.5	1.20%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-5.163e+00	0.0211	94.0	10.78%	3907.2	8.28%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-5.157e+00	0.0211	75.0	8.60%	3005.1	6.37%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-2	-5.138e+00	0.0211	82.0	9.40%	3338.7	7.08%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-2	-5.095e+00	0.0219	46.0	5.28%	1679.5	3.56%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-2	-5.042e+00	0.0228	6.0	0.69%	88.2	0.19%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-4.986e+00	0.0239	40.0	4.59%	1423.0	3.02%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-4.946e+00	0.0246	15.0	1.72%	390.1	0.83%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-2	-4.909e+00	0.0253	27.0	3.10%	870.7	1.85%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-4.868e+00	0.0262	7.0	0.80%	120.5	0.26%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-4.866e+00	0.0262	54.0	6.19%	2065.6	4.38%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-2	-4.839e+00	0.0264	17.0	1.95%	471.3	1.00%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-4.827e+00	0.0265	87.0	9.98%	3621.6	7.68%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-2	-4.683e+00	0.0304	52.0	5.96%	1994.8	4.23%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-4.676e+00	0.0304	3.0	0.34%	23.7	0.05%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-4.608e+00	0.0321	10.0	1.15%	224.5	0.48%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-4.520e+00	0.0348	121.0	13.88%	5331.9	11.30%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-4.500e+00	0.0352	11.0	1.26%	263.2	0.56%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-4.444e+00	0.0369	33.0	3.78%	1164.6	2.47%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-4.436e+00	0.0369	67.0	7.68%	2724.7	5.77%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-4.250e+00	0.0440	11.0	1.26%	273.4	0.58%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-4.225e+00	0.0447	4.0	0.46%	50.3	0.11%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-4.213e+00	0.0449	80.0	9.17%	3378.1	7.16%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-4.160e+00	0.0470	25.0	2.87%	841.4	1.78%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-4.047e+00	0.0521	10.0	1.15%	245.4	0.52%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-3.953e+00	0.0568	40.0	4.59%	1526.8	3.24%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.906e+00	0.0590	5.0	0.57%	83.3	0.18%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-3.817e+00	0.0640	41.0	4.70%	1588.0	3.37%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.798e+00	0.0647	35.0	4.01%	1315.7	2.79%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.773e+00	0.0658	36.0	4.13%	1363.2	2.89%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-3.656e+00	0.0734	42.0	4.82%	1652.3	3.50%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.646e+00	0.0736	10.0	1.15%	262.8	0.56%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.640e+00	0.0736	65.0	7.45%	2744.6	5.82%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.631e+00	0.0736	23.0	2.64%	797.4	1.69%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.601e+00	0.0753	161.0	18.46%	7543.6	15.99%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-3.540e+00	0.0794	27.0	3.10%	981.6	2.08%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.523e+00	0.0802	95.0	10.89%	4233.3	8.97%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-3.497e+00	0.0817	47.0	5.39%	1906.6	4.04%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.450e+00	0.0850	17.0	1.95%	554.4	1.17%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-3.387e+00	0.0898	9.0	1.03%	236.3	0.50%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-3.381e+00	0.0898	48.0	5.50%	1969.4	4.17%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.346e+00	0.0922	14.0	1.61%	436.5	0.93%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-3.342e+00	0.0922	76.0	8.72%	3329.1	7.06%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.313e+00	0.0940	34.0	3.90%	1322.9	2.80%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.224e+00	0.1021	5.0	0.57%	100.0	0.21%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.223e+00	0.1021	7.0	0.80%	169.5	0.36%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.209e+00	0.1021	108.0	12.39%	4948.1	10.49%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.188e+00	0.1035	18.0	2.06%	616.1	1.31%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-3.129e+00	0.1091	42.0	4.82%	1719.8	3.64%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-3.096e+00	0.1120	6.0	0.69%	139.0	0.29%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.095e+00	0.1120	19.0	2.18%	667.3	1.41%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.062e+00	0.1144	78.0	8.94%	3480.4	7.38%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-3.039e+00	0.1162	88.0	10.09%	3982.7	8.44%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.957e+00	0.1253	3.0	0.34%	45.2	0.10%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-2.760e+00	0.1516	2.0	0.23%	22.9	0.05%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-2.709e+00	0.1585	13.0	1.49%	437.1	0.93%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-2.691e+00	0.1602	15.0	1.72%	525.6	1.11%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-2.629e+00	0.1695	5.0	0.57%	119.4	0.25%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-2.593e+00	0.1745	34.0	3.90%	1412.2	2.99%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-2.534e+00	0.1840	24.0	2.75%	948.4	2.01%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.489e+00	0.1911	6.0	0.69%	162.8	0.35%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-2.445e+00	0.1986	3.0	0.34%	56.2	0.12%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-2.428e+00	0.2006	37.0	4.24%	1580.7	3.35%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.418e+00	0.2015	59.0	6.77%	2663.9	5.65%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-2.411e+00	0.2016	96.0	11.01%	4530.5	9.60%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-2.393e+00	0.2040	5.0	0.57%	129.0	0.27%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-2.377e+00	0.2060	29.0	3.33%	1203.8	2.55%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.343e+00	0.2119	16.0	1.83%	600.7	1.27%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.336e+00	0.2120	82.0	9.40%	3838.0	8.13%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.315e+00	0.2152	82.0	9.40%	3842.6	8.14%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.310e+00	0.2152	223.0	25.57%	11163.2	23.66%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-2.297e+00	0.2167	5.0	0.57%	132.6	0.28%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.239e+00	0.2281	23.0	2.64%	936.5	1.98%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.234e+00	0.2281	2.0	0.23%	30.8	0.07%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.221e+00	0.2296	42.0	4.82%	1858.7	3.94%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.202e+00	0.2327	46.0	5.28%	2059.2	4.36%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.197e+00	0.2327	6.0	0.69%	176.1	0.37%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.181e+00	0.2348	42.0	4.82%	1865.5	3.95%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.175e+00	0.2350	46.0	5.28%	2064.6	4.38%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.171e+00	0.2350	15.0	1.72%	571.2	1.21%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.128e+00	0.2436	13.0	1.49%	484.2	1.03%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.111e+00	0.2463	16.0	1.83%	623.9	1.32%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.095e+00	0.2490	29.0	3.33%	1243.1	2.63%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.074e+00	0.2528	4.0	0.46%	103.8	0.22%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.068e+00	0.2529	29.0	3.33%	1247.9	2.64%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.053e+00	0.2554	5.0	0.57%	143.9	0.31%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.032e+00	0.2593	18.0	2.06%	725.4	1.54%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.000e+00	0.2663	49.0	5.62%	2248.3	4.76%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.939e+00	0.2815	21.0	2.41%	879.4	1.86%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.876e+00	0.2983	1.0	0.11%	9.8	0.02%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.874e+00	0.2983	5.0	0.57%	152.9	0.32%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.860e+00	0.2998	7.0	0.80%	238.0	0.50%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.856e+00	0.2998	10.0	1.15%	372.1	0.79%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.832e+00	0.3050	12.0	1.38%	466.5	0.99%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.809e+00	0.3104	6.0	0.69%	198.9	0.42%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.789e+00	0.3151	13.0	1.49%	517.8	1.10%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.789e+00	0.3151	32.0	3.67%	1440.3	3.05%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.765e+00	0.3195	155.0	17.78%	7797.4	16.53%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.765e+00	0.3195	5.0	0.57%	158.3	0.34%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.759e+00	0.3195	20.0	2.29%	855.1	1.81%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.747e+00	0.3203	5.0	0.57%	160.0	0.34%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.740e+00	0.3209	15.0	1.72%	618.0	1.31%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.731e+00	0.3225	116.0	13.30%	5766.6	12.22%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.719e+00	0.3247	7.0	0.80%	248.4	0.53%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.714e+00	0.3247	22.0	2.52%	959.1	2.03%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.713e+00	0.3247	36.0	4.13%	1654.6	3.51%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.693e+00	0.3282	4.0	0.46%	120.8	0.26%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.672e+00	0.3337	18.0	2.06%	770.2	1.63%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.630e+00	0.3461	42.0	4.82%	1974.9	4.19%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.619e+00	0.3482	40.0	4.59%	1875.2	3.97%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.614e+00	0.3483	47.0	5.39%	2232.3	4.73%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.592e+00	0.3544	19.0	2.18%	830.6	1.76%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.582e+00	0.3563	33.0	3.78%	1529.7	3.24%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.582e+00	0.3563	5.0	0.57%	169.2	0.36%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.559e+00	0.3611	42.0	4.82%	1990.9	4.22%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.460e+00	0.3968	189.0	21.67%	9729.8	20.62%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.442e+00	0.4020	32.0	3.67%	1507.1	3.19%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.442e+00	0.4020	56.0	6.42%	2739.5	5.81%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.435e+00	0.4020	14.0	1.61%	607.9	1.29%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.433e+00	0.4020	7.0	0.80%	271.2	0.57%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.422e+00	0.4027	12.0	1.38%	511.7	1.08%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.419e+00	0.4027	5.0	0.57%	180.7	0.38%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.418e+00	0.4027	1.0	0.11%	15.1	0.03%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.417e+00	0.4027	9.0	1.03%	367.5	0.78%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.415e+00	0.4027	44.0	5.05%	2127.2	4.51%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.414e+00	0.4027	12.0	1.38%	512.2	1.09%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.404e+00	0.4027	22.0	2.52%	1009.1	2.14%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.392e+00	0.4027	21.0	2.41%	961.5	2.04%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.386e+00	0.4029	15.0	1.72%	663.3	1.41%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.384e+00	0.4029	49.0	5.62%	2393.8	5.07%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.358e+00	0.4106	15.0	1.72%	667.1	1.41%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.355e+00	0.4106	6.0	0.69%	231.4	0.49%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.355e+00	0.4106	6.0	0.69%	231.3	0.49%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.343e+00	0.4113	11.0	1.26%	472.3	1.00%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.297e+00	0.4288	16.0	1.83%	726.2	1.54%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.283e+00	0.4333	23.0	2.64%	1082.6	2.29%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.274e+00	0.4351	8.0	0.92%	334.9	0.71%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.260e+00	0.4392	5.0	0.57%	192.6	0.41%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.247e+00	0.4430	3.0	0.34%	101.7	0.22%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.238e+00	0.4455	17.0	1.95%	786.7	1.67%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.233e+00	0.4458	28.0	3.21%	1348.7	2.86%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.224e+00	0.4479	13.0	1.49%	587.2	1.24%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.224e+00	0.4479	5.0	0.57%	195.1	0.41%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.208e+00	0.4514	15.0	1.72%	690.9	1.46%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.203e+00	0.4516	37.0	4.24%	1820.0	3.86%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.179e+00	0.4605	45.0	5.16%	2243.8	4.76%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.153e+00	0.4710	15.0	1.72%	699.3	1.48%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.128e+00	0.4808	7.0	0.80%	301.8	0.64%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.112e+00	0.4867	14.0	1.61%	655.9	1.39%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.074e+00	0.5033	45.0	5.16%	2275.9	4.82%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.052e+00	0.5124	81.0	9.29%	4186.6	8.87%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-9.941e-01	0.5410	1.0	0.11%	25.1	0.05%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-9.892e-01	0.5414	18.0	2.06%	884.1	1.87%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.885e-01	0.5414	4.0	0.46%	167.1	0.35%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-9.876e-01	0.5414	13.0	1.49%	625.3	1.33%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-9.774e-01	0.5414	4.0	0.46%	169.0	0.36%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-9.540e-01	0.5520	15.0	1.72%	735.4	1.56%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-9.365e-01	0.5596	3.0	0.34%	122.6	0.26%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-9.242e-01	0.5643	92.0	10.55%	4831.1	10.24%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-9.013e-01	0.5751	93.0	10.67%	4896.2	10.38%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-8.844e-01	0.5826	9.0	1.03%	435.5	0.92%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-8.542e-01	0.5982	30.0	3.44%	1551.4	3.29%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-8.322e-01	0.6091	8.0	0.92%	391.9	0.83%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-8.280e-01	0.6093	46.0	5.28%	2414.2	5.12%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-8.261e-01	0.6093	81.0	9.29%	4291.4	9.10%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-8.258e-01	0.6093	4.0	0.46%	183.6	0.39%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-8.093e-01	0.6138	5.0	0.57%	237.1	0.50%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-8.013e-01	0.6164	5.0	0.57%	238.8	0.51%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.935e-01	0.6189	5.0	0.57%	239.4	0.51%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-7.889e-01	0.6194	8.0	0.92%	398.7	0.85%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.889e-01	0.6194	9.0	1.03%	451.0	0.96%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.857e-01	0.6194	5.0	0.57%	240.2	0.51%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.837e-01	0.6194	1.0	0.11%	33.8	0.07%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.640e-01	0.6256	2.0	0.23%	85.6	0.18%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-7.374e-01	0.6401	16.0	1.83%	836.4	1.77%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.141e-01	0.6528	2.0	0.23%	89.4	0.19%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-7.062e-01	0.6556	89.0	10.21%	4788.2	10.15%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.660e-01	0.6800	1.0	0.11%	39.5	0.08%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.489e-01	0.6892	67.0	7.68%	3630.0	7.69%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.489e-01	0.6892	6.0	0.69%	314.1	0.67%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.304e-01	0.6971	8.0	0.92%	427.7	0.91%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.100e-01	0.7089	4.0	0.46%	210.4	0.45%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.892e-01	0.7212	3.0	0.34%	157.9	0.33%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.772e-01	0.7273	29.0	3.33%	1595.0	3.38%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.760e-01	0.7273	25.0	2.87%	1376.5	2.92%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.711e-01	0.7273	23.0	2.64%	1268.3	2.69%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-5.661e-01	0.7277	6.0	0.69%	329.7	0.70%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.532e-01	0.7345	84.0	9.63%	4615.4	9.78%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.463e-01	0.7370	29.0	3.33%	1608.3	3.41%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-5.313e-01	0.7455	26.0	2.98%	1449.1	3.07%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.177e-01	0.7531	1.0	0.11%	49.4	0.10%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.175e-01	0.7531	36.0	4.13%	2007.3	4.25%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.158e-01	0.7531	10.0	1.15%	565.4	1.20%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-5.144e-01	0.7531	61.0	7.00%	3383.1	7.17%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-4.721e-01	0.7775	26.0	2.98%	1475.4	3.13%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-4.713e-01	0.7775	15.0	1.72%	860.4	1.82%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.545e-01	0.7859	31.0	3.56%	1762.4	3.74%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.529e-01	0.7859	10.0	1.15%	583.4	1.24%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.454e-01	0.7877	6.0	0.69%	355.4	0.75%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.432e-01	0.7877	116.0	13.30%	6455.6	13.68%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.363e-01	0.7896	17.0	1.95%	986.8	2.09%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.306e-01	0.7914	5.0	0.57%	300.4	0.64%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-4.299e-01	0.7914	20.0	2.29%	1158.2	2.45%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.128e-01	0.8003	15.0	1.72%	882.2	1.87%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-4.026e-01	0.8059	8.0	0.92%	483.1	1.02%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.000e-01	0.8059	1.0	0.11%	60.1	0.13%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.886e-01	0.8119	27.0	3.10%	1573.6	3.34%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-3.839e-01	0.8130	28.0	3.21%	1632.3	3.46%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.805e-01	0.8130	7.0	0.80%	431.5	0.91%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.798e-01	0.8130	6.0	0.69%	372.3	0.79%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.683e-01	0.8177	3.0	0.34%	193.3	0.41%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-3.591e-01	0.8226	26.0	2.98%	1533.5	3.25%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.050e-01	0.8655	14.0	1.61%	872.8	1.85%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.948e-01	0.8716	2.0	0.23%	144.2	0.31%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.928e-01	0.8716	34.0	3.90%	2032.3	4.31%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.861e-01	0.8736	84.0	9.63%	4851.2	10.28%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.836e-01	0.8736	7.0	0.80%	464.8	0.99%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.836e-01	0.8736	7.0	0.80%	464.4	0.98%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.833e-01	0.8736	8.0	0.92%	525.1	1.11%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.803e-01	0.8736	20.0	2.29%	1236.3	2.62%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.786e-01	0.8736	17.0	1.95%	1062.3	2.25%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.691e-01	0.8736	3.0	0.34%	217.6	0.46%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.605e-01	0.8766	51.0	5.85%	3026.0	6.41%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.601e-01	0.8766	2.0	0.23%	152.0	0.32%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.601e-01	0.8766	2.0	0.23%	152.0	0.32%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.507e-01	0.8770	4.0	0.46%	288.1	0.61%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.430e-01	0.8811	14.0	1.61%	906.7	1.92%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.300e-01	0.8899	6.0	0.69%	424.4	0.90%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.964e-01	0.9174	5.0	0.57%	375.8	0.80%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.958e-01	0.9174	32.0	3.67%	2003.5	4.25%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.957e-01	0.9174	56.0	6.42%	3385.2	7.17%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.951e-01	0.9174	48.0	5.50%	2928.8	6.21%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.744e-01	0.9265	5.0	0.57%	386.7	0.82%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.711e-01	0.9268	1.0	0.11%	100.6	0.21%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.691e-01	0.9268	14.0	1.61%	958.3	2.03%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.508e-01	0.9401	17.0	1.95%	1158.3	2.45%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.260e-01	0.9608	18.0	2.06%	1246.6	2.64%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.239e-01	0.9608	7.0	0.80%	552.5	1.17%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.201e-01	0.9608	13.0	1.49%	942.6	2.00%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-9.757e-02	0.9797	4.0	0.46%	367.4	0.78%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-9.466e-02	0.9797	2.0	0.23%	217.2	0.46%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-9.225e-02	0.9797	19.0	2.18%	1354.6	2.87%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-9.151e-02	0.9797	8.0	0.92%	650.3	1.38%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-8.392e-02	0.9815	8.0	0.92%	659.4	1.40%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-8.310e-02	0.9815	15.0	1.72%	1117.1	2.37%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-7.620e-02	0.9834	31.0	3.56%	2121.5	4.50%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.538e-02	0.9834	3.0	0.34%	312.0	0.66%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.708e-02	0.9866	35.0	4.01%	2386.3	5.06%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.240e-02	0.9983	13.0	1.49%	1046.0	2.22%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.868e-02	0.9992	25.0	2.87%	1824.4	3.87%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.309e-02	1.0000	1.0	0.11%	171.8	0.36%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.551e-02	1.0000	3.0	0.34%	366.4	0.78%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-3.434e-02	1.0000	1.0	0.11%	183.7	0.39%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.197e-02	1.0000	50.0	5.73%	3430.6	7.27%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.004e-02	1.0000	30.0	3.44%	2272.6	4.82%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.608e-02	1.0000	2.0	0.23%	329.1	0.70%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.207e-02	1.0000	4.0	0.46%	528.9	1.12%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.210e-04	1.0000	41.0	4.70%	3588.0	7.60%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-7.000e-06	1.0000	43.0	4.93%	4118.2	8.73%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	27.0	0.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	10.1	0.02%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	115.3	0.24%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	72.2	0.15%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	39.8	0.08%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.4	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	16.4	0.03%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	5.4	0.01%