Information for 2-KSCTGCCAGBCWCHYT (Motif 7)

C A T G T A C G A T G C G C A T C A T G T G A C G T A C C G T A T A C G A C G T A T G C G C T A T A G C G A C T A G C T C G A T
Reverse Opposite:
G C T A C T A G C T G A A T C G C G A T T A C G T G A C A T G C C G A T A C T G A C T G G T A C C G T A A T C G A T G C G T A C
p-value:1e-16
log p-value:-3.802e+01
Information Content per bp:1.576
Number of Target Sequences with motif80.0
Percentage of Target Sequences with motif9.17%
Number of Background Sequences with motif1468.6
Percentage of Background Sequences with motif3.11%
Average Position of motif in Targets48.6 +/- 23.1bp
Average Position of motif in Background49.6 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:KSCTGCCAGBCWCHYT
GSCTGTCACTCA----
 C A T G T A C G A T G C G C A T C A T G T G A C G T A C C G T A T A C G A C G T A T G C G C T A T A G C G A C T A G C T C G A T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:KSCTGCCAGBCWCHYT
VGCTGWCAVB------
 C A T G T A C G A T G C G C A T C A T G T G A C G T A C C G T A T A C G A C G T A T G C G C T A T A G C G A C T A G C T C G A T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:KSCTGCCAGBCWCHYT
--CTGTCTGTCACCT-
 C A T G T A C G A T G C G C A T C A T G T G A C G T A C C G T A T A C G A C G T A T G C G C T A T A G C G A C T A G C T C G A T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:KSCTGCCAGBCWCHYT
-SCTGTCAVTCAV---
 C A T G T A C G A T G C G C A T C A T G T G A C G T A C C G T A T A C G A C G T A T G C G C T A T A G C G A C T A G C T C G A T
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:KSCTGCCAGBCWCHYT
-NCTGTCAATCAN---
 C A T G T A C G A T G C G C A T C A T G T G A C G T A C C G T A T A C G A C G T A T G C G C T A T A G C G A C T A G C T C G A T
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-KSCTGCCAGBCWCHYT
TGGCAGNCTGCCAG---
 A C G T C A T G T A C G A T G C G C A T C A T G T G A C G T A C C G T A T A C G A C G T A T G C G C T A T A G C G A C T A G C T C G A T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:KSCTGCCAGBCWCHYT
-CCAGACAG-------
 C A T G T A C G A T G C G C A T C A T G T G A C G T A C C G T A T A C G A C G T A T G C G C T A T A G C G A C T A G C T C G A T
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:KSCTGCCAGBCWCHYT
---TGTCTGDCACCT-
 C A T G T A C G A T G C G C A T C A T G T G A C G T A C C G T A T A C G A C G T A T G C G C T A T A G C G A C T A G C T C G A T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:KSCTGCCAGBCWCHYT
--TTGCCAAG------
 C A T G T A C G A T G C G C A T C A T G T G A C G T A C C G T A T A C G A C G T A T G C G C T A T A G C G A C T A G C T C G A T
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:KSCTGCCAGBCWCHYT
-BCAGACWA-------
 C A T G T A C G A T G C G C A T C A T G T G A C G T A C C G T A T A C G A C G T A T G C G C T A T A G C G A C T A G C T C G A T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T