Information for 20-CACGCKYGRCGKC (Motif 30)

G T A C C G T A A G T C A C T G A G T C A C T G A G C T A C T G C T G A A G T C A C T G A C G T A G T C
Reverse Opposite:
A C T G T G C A A G T C A C T G A G C T A G T C T C G A G T A C A C T G A G T C A C T G A C G T A C T G
p-value:1e-8
log p-value:-1.916e+01
Information Content per bp:1.871
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.2 +/- 23.6bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CACGCKYGRCGKC
CACGCA-------
 G T A C C G T A A G T C A C T G A G T C A C T G A G C T A C T G C T G A A G T C A C T G A C G T A G T C
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CACGCKYGRCGKC
GGCACGCGTC-----
 A C G T A C G T G T A C C G T A A G T C A C T G A G T C A C T G A G C T A C T G C T G A A G T C A C T G A C G T A G T C
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T A C G T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------CACGCKYGRCGKC
NGCANTCATGCGTGACG--
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A G T C A C T G A G T C A C T G A G C T A C T G C T G A A G T C A C T G A C G T A G T C
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CACGCKYGRCGKC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T G T A C C G T A A G T C A C T G A G T C A C T G A G C T A C T G C T G A A G T C A C T G A C G T A G T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------CACGCKYGRCGKC
TGCAGTCATGCGTGACG--
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A G T C A C T G A G T C A C T G A G C T A C T G C T G A A G T C A C T G A C G T A G T C
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CACGCKYGRCGKC
TTCACGCATGAGTT-
 A C G T A C G T G T A C C G T A A G T C A C T G A G T C A C T G A G C T A C T G C T G A A G T C A C T G A C G T A G T C
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CACGCKYGRCGKC----
GTCACGCTTGGCTGCNCNN
 A C G T A C G T G T A C C G T A A G T C A C T G A G T C A C T G A G C T A C T G C T G A A G T C A C T G A C G T A G T C A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CACGCKYGRCGKC
GTCATGCHTGRCTGS
 A C G T A C G T G T A C C G T A A G T C A C T G A G T C A C T G A G C T A C T G C T G A A G T C A C T G A C G T A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CACGCKYGRCGKC
TBGCACGCAA------
 A C G T A C G T A C G T G T A C C G T A A G T C A C T G A G T C A C T G A G C T A C T G C T G A A G T C A C T G A C G T A G T C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CACGCKYGRCGKC
GCACGTNC------
 A C G T G T A C C G T A A G T C A C T G A G T C A C T G A G C T A C T G C T G A A G T C A C T G A C G T A G T C
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T A C G T A C G T A C G T A C G T