Information for 6-AGGRTATTSTSCW (Motif 7)

C G T A A C T G A C T G T C A G A C G T C G T A A C G T A C G T A T C G A C G T A T G C A G T C C G A T
Reverse Opposite:
C G T A A C T G A T C G C G T A A T G C C G T A G T C A A C G T C G T A A G T C G T A C A G T C A C G T
p-value:1e-13
log p-value:-3.064e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.5 +/- 16.8bp
Average Position of motif in Background10.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AGGRTATTSTSCW
AAGGATATNTN---
 A C G T C G T A A C T G A C T G T C A G A C G T C G T A A C G T A C G T A T C G A C G T A T G C A G T C C G A T
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGRTATTSTSCW----
AATCAATTGTTCCGCTA
 C G T A A C T G A C T G T C A G A C G T C G T A A C G T A C G T A T C G A C G T A T G C A G T C C G A T A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AGGRTATTSTSCW
CTACTAGGATGTNNTN--
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G T C A G A C G T C G T A A C G T A C G T A T C G A C G T A T G C A G T C C G A T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGRTATTSTSCW----
CNNNTATTGTTCNNNNN
 C G T A A C T G A C T G T C A G A C G T C G T A A C G T A C G T A T C G A C G T A T G C A G T C C G A T A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

NFKB1/MA0105.4/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGRTATTSTSCW
AGGGGAATCCCCT
 C G T A A C T G A C T G T C A G A C G T C G T A A C G T A C G T A T C G A C G T A T G C A G T C C G A T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGGRTATTSTSCW---
NNTTTATTGTTCTNNN
 C G T A A C T G A C T G T C A G A C G T C G T A A C G T A C G T A T C G A C G T A T G C A G T C C G A T A C G T A C G T A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGGRTATTSTSCW
--CTCATTGTC--
 C G T A A C T G A C T G T C A G A C G T C G T A A C G T A C G T A T C G A C G T A T G C A G T C C G A T
A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGGRTATTSTSCW---
AANTTATTGTTCTNNA
 C G T A A C T G A C T G T C A G A C G T C G T A A C G T A C G T A T C G A C G T A T G C A G T C C G A T A C G T A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

NFKB2/MA0778.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGRTATTSTSCW
AGGGGATTCCCCT
 C G T A A C T G A C T G T C A G A C G T C G T A A C G T A C G T A T C G A C G T A T G C A G T C C G A T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGGRTATTSTSCW---
ANNTCTATTGTTCNNNA
 A C G T C G T A A C T G A C T G T C A G A C G T C G T A A C G T A C G T A T C G A C G T A T G C A G T C C G A T A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A