Information for 12-GTCAGGTTTC (Motif 27)

A C T G A C G T A G T C C G T A C T A G T A C G A C G T A C G T C G A T A G T C
Reverse Opposite:
C T A G C G T A C G T A G T C A A T G C G A T C A C G T A C T G T G C A A G T C
p-value:1e-7
log p-value:-1.762e+01
Information Content per bp:1.842
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif108.9
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets58.8 +/- 24.8bp
Average Position of motif in Background48.3 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GTCAGGTTTC
GKVTCADRTTWC
 A C G T A C G T A C T G A C G T A G T C C G T A C T A G T A C G A C G T A C G T C G A T A G T C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGGTTTC
GKMTCADRTTWC
 A C G T A C G T A C T G A C G T A G T C C G T A C T A G T A C G A C G T A C G T C G A T A G T C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GTCAGGTTTC---
---TGGTTTCAGT
 A C T G A C G T A G T C C G T A C T A G T A C G A C G T A C G T C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

PKNOX2/MA0783.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGTTTC-
TGACAGGTGTCA
 A C G T A C T G A C G T A G T C C G T A C T A G T A C G A C G T A C G T C G A T A G T C A C G T
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A

PKNOX1/MA0782.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGTTTC-
TGACAGGTGTCA
 A C G T A C T G A C G T A G T C C G T A C T A G T A C G A C G T A C G T C G A T A G T C A C G T
G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A

SNAI2/MA0745.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTCAGGTTTC
AACAGGTGT-
 A C T G A C G T A G T C C G T A C T A G T A C G A C G T A C G T C G A T A G T C
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T

PB0034.1_Irf4_1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTCAGGTTTC------
-TNTGGTTTCGATACN
 A C T G A C G T A G T C C G T A C T A G T A C G A C G T A C G T C G A T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A C G T G A C T C T A G A T C G C G A T C G A T A C G T A G T C C T A G C T G A G C A T G C T A G A T C A C T G

TGIF2/MA0797.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGTTTC-
TGACAGCTGTCA
 A C G T A C T G A C G T A G T C C G T A C T A G T A C G A C G T A C G T C G A T A G T C A C G T
G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGTTTC
TGTCANYT---
 A C G T A C T G A C G T A G T C C G T A C T A G T A C G A C G T A C G T C G A T A G T C
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGTTTC
AGTCACGC---
 A C G T A C T G A C G T A G T C C G T A C T A G T A C G A C G T A C G T C G A T A G T C
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T