Information for 18-ATTTRTRWCCWGT (Motif 22)

C G T A A C G T A C G T A C G T C T G A A C G T T C G A C G T A A G T C A G T C C G T A A C T G C G A T
Reverse Opposite:
C G T A A G T C C G A T A C T G A C T G C G A T A G C T C G T A A G C T C G T A C G T A C G T A A C G T
p-value:1e-9
log p-value:-2.105e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.8 +/- 29.1bp
Average Position of motif in Background49.5 +/- 44.0bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATTTRTRWCCWGT
TGATTTATGGCC---
 A C G T A C G T C G T A A C G T A C G T A C G T C T G A A C G T T C G A C G T A A G T C A G T C C G T A A C T G C G A T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ATTTRTRWCCWGT
NTGATTTATGGCC---
 A C G T A C G T A C G T C G T A A C G T A C G T A C G T C T G A A C G T T C G A C G T A A G T C A G T C C G T A A C T G C G A T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATTTRTRWCCWGT
TGATTTATGGCC---
 A C G T A C G T C G T A A C G T A C G T A C G T C T G A A C G T T C G A C G T A A G T C A G T C C G T A A C T G C G A T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ATTTRTRWCCWGT
NAATTTTATTACCNNN
 A C G T A C G T A C G T C G T A A C G T A C G T A C G T C T G A A C G T T C G A C G T A A G T C A G T C C G T A A C T G C G A T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

PH0012.1_Cdx1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATTTRTRWCCWGT
NAATTTTATTACCTNN
 A C G T A C G T A C G T C G T A A C G T A C G T A C G T C T G A A C G T T C G A C G T A A G T C A G T C C G T A A C T G C G A T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ATTTRTRWCCWGT
DGWTTTATGRCN---
 A C G T A C G T C G T A A C G T A C G T A C G T C T G A A C G T T C G A C G T A A G T C A G T C C G T A A C T G C G A T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATTTRTRWCCWGT
NNAATTAATGACCNNN
 A C G T A C G T A C G T C G T A A C G T A C G T A C G T C T G A A C G T T C G A C G T A A G T C A G T C C G T A A C T G C G A T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATTTRTRWCCWGT
NTTTTATGAC----
 A C G T C G T A A C G T A C G T A C G T C T G A A C G T T C G A C G T A A G T C A G T C C G T A A C T G C G A T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATTTRTRWCCWGT
TGATTTATGGC----
 A C G T A C G T C G T A A C G T A C G T A C G T C T G A A C G T T C G A C G T A A G T C A G T C C G T A A C T G C G A T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATTTRTRWCCWGT
TTTTATGGCTN--
 C G T A A C G T A C G T A C G T C T G A A C G T T C G A C G T A A G T C A G T C C G T A A C T G C G A T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T