Information for 1-CTGBTTTTHATCA (Motif 2)

G T A C A C G T A C T G A G C T G C A T G C A T G A C T A G C T G T C A G C T A C G A T G A T C G C T A
Reverse Opposite:
C G A T C T A G C G T A C A G T C A G T T C G A C T G A C G T A C G T A T C G A A G T C C G T A A C T G
p-value:1e-45
log p-value:-1.045e+02
Information Content per bp:1.632
Number of Target Sequences with motif122.0
Percentage of Target Sequences with motif14.56%
Number of Background Sequences with motif1386.4
Percentage of Background Sequences with motif3.01%
Average Position of motif in Targets46.2 +/- 25.1bp
Average Position of motif in Background49.8 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--CTGBTTTTHATCA
GYCTGGYYTNTGTCA
 A C G T A C G T G T A C A C G T A C T G A G C T G C A T G C A T G A C T A G C T G T C A G C T A C G A T G A T C G C T A
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:2
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CTGBTTTTHATCA-
ACATCTGGWWTYAATTAR
 A C G T A C G T A C G T A C G T G T A C A C G T A C T G A G C T G C A T G C A T G A C T A G C T G T C A G C T A C G A T G A T C G C T A A C G T
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGBTTTTHATCA--
NAGATWNBNATCTNN
 G T A C A C G T A C T G A G C T G C A T G C A T G A C T A G C T G T C A G C T A C G A T G A T C G C T A A C G T A C G T
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTGBTTTTHATCA-
--GYCATCMATCAT
 G T A C A C G T A C T G A G C T G C A T G C A T G A C T A G C T G T C A G C T A C G A T G A T C G C T A A C G T
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGBTTTTHATCA
-RGCCATYAATCA
 G T A C A C G T A C T G A G C T G C A T G C A T G A C T A G C T G T C A G C T A C G A T G A T C G C T A
A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTGBTTTTHATCA
GGTCTGGCAT------
 A C G T A C G T A C G T G T A C A C G T A C T G A G C T G C A T G C A T G A C T A G C T G T C A G C T A C G A T G A T C G C T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

GATA2/MA0036.2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTGBTTTTHATCA--
-AGATTCTTATCTGT
 G T A C A C G T A C T G A G C T G C A T G C A T G A C T A G C T G T C A G C T A C G A T G A T C G C T A A C G T A C G T
A C G T C G T A C T A G C T G A G C A T A G C T A T G C A G C T C G A T C G T A A C G T A G T C C G A T A T C G G C A T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTGBTTTTHATCA
GCTGTG--------
 A C G T G T A C A C G T A C T G A G C T G C A T G C A T G A C T A G C T G T C A G C T A C G A T G A T C G C T A
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTGBTTTTHATCA
---TCATCAATCA
 G T A C A C G T A C T G A G C T G C A T G C A T G A C T A G C T G T C A G C T A C G A T G A T C G C T A
A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CTGBTTTTHATCA-
----ATTGCATCAT
 G T A C A C G T A C T G A G C T G C A T G C A T G A C T A G C T G T C A G C T A C G A T G A T C G C T A A C G T
A C G T A C G T A C G T A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T