Information for 7-WGAGAGAGAGACAGVS (Motif 33)

C G T A T A C G C G T A C T A G C G T A T A C G C G T A A T C G T C G A A T C G T C G A T A G C T C G A T A C G T C A G A T C G
Reverse Opposite:
T A G C A G T C A T G C A G C T A T C G A G C T A T G C A C G T A T G C A C G T A T G C G C A T G A T C C G A T A G T C G C A T
p-value:1e-4
log p-value:-1.032e+01
Information Content per bp:1.616
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif261.1
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets56.2 +/- 26.1bp
Average Position of motif in Background49.1 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:WGAGAGAGAGACAGVS
-AGGTGNCAGACAG--
 C G T A T A C G C G T A C T A G C G T A T A C G C G T A A T C G T C G A A T C G T C G A T A G C T C G A T A C G T C A G A T C G
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:WGAGAGAGAGACAGVS
-AGGTGHCAGACA---
 C G T A T A C G C G T A C T A G C G T A T A C G C G T A A T C G T C G A A T C G T C G A T A G C T C G A T A C G T C A G A T C G
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:WGAGAGAGAGACAGVS
TGAGTGACAGSC----
 C G T A T A C G C G T A C T A G C G T A T A C G C G T A A T C G T C G A A T C G T C G A T A G C T C G A T A C G T C A G A T C G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:WGAGAGAGAGACAGVS
---NTGATTGACAGN-
 C G T A T A C G C G T A C T A G C G T A T A C G C G T A A T C G T C G A A T C G T C G A T A G C T C G A T A C G T C A G A T C G
A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:WGAGAGAGAGACAGVS
------CCAGACRSVB
 C G T A T A C G C G T A C T A G C G T A T A C G C G T A A T C G T C G A A T C G T C G A T A G C T C G A T A C G T C A G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:WGAGAGAGAGACAGVS
---BTGABTGACAGS-
 C G T A T A C G C G T A C T A G C G T A T A C G C G T A A T C G T C G A A T C G T C G A T A G C T C G A T A C G T C A G A T C G
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:WGAGAGAGAGACAGVS-
--AGCAACAGCCGCACC
 C G T A T A C G C G T A C T A G C G T A T A C G C G T A A T C G T C G A A T C G T C G A T A G C T C G A T A C G T C A G A T C G A C G T
A C G T A C G T T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

IRF1/MA0050.2/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--WGAGAGAGAGACAGVS---
AAANNGAAAGTGAAAGTAAAN
 A C G T A C G T C G T A T A C G C G T A C T A G C G T A T A C G C G T A A T C G T C G A A T C G T C G A T A G C T C G A T A C G T C A G A T C G A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

PRDM1/MA0508.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:WGAGAGAGAGACAGVS-
--AGAAAGTGAAAGTGA
 C G T A T A C G C G T A C T A G C G T A T A C G C G T A A T C G T C G A A T C G T C G A T A G C T C G A T A C G T C A G A T C G A C G T
A C G T A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-WGAGAGAGAGACAGVS
GAAAGTGAAAGT-----
 A C G T C G T A T A C G C G T A C T A G C G T A T A C G C G T A A T C G T C G A A T C G T C G A T A G C T C G A T A C G T C A G A T C G
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T